Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LSM1O15116 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LSM1O15116 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LSM1O15116 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LSM1O15116 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.69■□□□□ 0.58
LSM1O15116 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.69■□□□□ 0.58
LSM1O15116 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.69■□□□□ 0.58
LSM1O15116 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.69■□□□□ 0.58
LSM1O15116 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
LSM1O15116 AC091874.3-201ENST00000512672 1195 ntBASIC18.69■□□□□ 0.58
LSM1O15116 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.69■□□□□ 0.58
LSM1O15116 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
LSM1O15116 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.69■□□□□ 0.58
LSM1O15116 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.69■□□□□ 0.58
LSM1O15116 AC006557.6-201ENST00000623071 864 ntBASIC18.69■□□□□ 0.58
LSM1O15116 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LSM1O15116 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LSM1O15116 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LSM1O15116 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.68■□□□□ 0.58
LSM1O15116 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LSM1O15116 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.68■□□□□ 0.58
LSM1O15116 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
LSM1O15116 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.68■□□□□ 0.58
LSM1O15116 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 GUSBP6-202ENST00000438529 1198 ntBASIC18.68■□□□□ 0.58
LSM1O15116 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.68■□□□□ 0.58
LSM1O15116 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
LSM1O15116 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.68■□□□□ 0.58
LSM1O15116 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.68■□□□□ 0.58
LSM1O15116 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LSM1O15116 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LSM1O15116 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LSM1O15116 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.68■□□□□ 0.58
LSM1O15116 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LSM1O15116 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LSM1O15116 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.67■□□□□ 0.58
LSM1O15116 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.67■□□□□ 0.58
LSM1O15116 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.67■□□□□ 0.58
LSM1O15116 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LSM1O15116 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.67■□□□□ 0.58
LSM1O15116 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.67■□□□□ 0.58
LSM1O15116 AC006970.2-201ENST00000450065 779 ntBASIC18.67■□□□□ 0.58
LSM1O15116 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.67■□□□□ 0.58
LSM1O15116 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.67■□□□□ 0.58
LSM1O15116 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
LSM1O15116 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.67■□□□□ 0.58
LSM1O15116 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LSM1O15116 AL049812.1-201ENST00000432563 2267 ntBASIC18.67■□□□□ 0.58
LSM1O15116 FZD10-202ENST00000539839 3282 ntBASIC18.67■□□□□ 0.58
LSM1O15116 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
LSM1O15116 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC18.67■□□□□ 0.58
LSM1O15116 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LSM1O15116 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.66■□□□□ 0.58
LSM1O15116 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LSM1O15116 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
LSM1O15116 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 RPS2P52-201ENST00000469610 820 ntBASIC18.66■□□□□ 0.58
LSM1O15116 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.66■□□□□ 0.58
LSM1O15116 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LSM1O15116 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
LSM1O15116 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.66■□□□□ 0.58
LSM1O15116 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LSM1O15116 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms