Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COPB1P53618 AC069236.1-201ENST00000604339 616 ntBASIC21.67■■□□□ 1.06
COPB1P53618 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COPB1P53618 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COPB1P53618 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COPB1P53618 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COPB1P53618 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.67■■□□□ 1.06
COPB1P53618 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
COPB1P53618 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.66■■□□□ 1.06
COPB1P53618 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
COPB1P53618 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.66■■□□□ 1.06
COPB1P53618 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.66■■□□□ 1.06
COPB1P53618 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
COPB1P53618 PTGES2-AS1-201ENST00000443493 2100 ntBASIC21.66■■□□□ 1.06
COPB1P53618 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.66■■□□□ 1.06
COPB1P53618 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.66■■□□□ 1.06
COPB1P53618 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.66■■□□□ 1.06
COPB1P53618 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.66■■□□□ 1.06
COPB1P53618 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COPB1P53618 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
COPB1P53618 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.66■■□□□ 1.06
COPB1P53618 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
COPB1P53618 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC21.66■■□□□ 1.06
COPB1P53618 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COPB1P53618 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
COPB1P53618 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COPB1P53618 PHGDH-210ENST00000641115 1638 ntBASIC21.66■■□□□ 1.06
COPB1P53618 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COPB1P53618 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
COPB1P53618 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COPB1P53618 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COPB1P53618 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COPB1P53618 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.65■■□□□ 1.06
COPB1P53618 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
COPB1P53618 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COPB1P53618 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COPB1P53618 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COPB1P53618 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COPB1P53618 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.65■■□□□ 1.06
COPB1P53618 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.65■■□□□ 1.06
COPB1P53618 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.65■■□□□ 1.06
COPB1P53618 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.65■■□□□ 1.06
COPB1P53618 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.65■■□□□ 1.06
COPB1P53618 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COPB1P53618 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.65■■□□□ 1.06
COPB1P53618 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COPB1P53618 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COPB1P53618 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COPB1P53618 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.65■■□□□ 1.06
COPB1P53618 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.65■■□□□ 1.06
COPB1P53618 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
COPB1P53618 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COPB1P53618 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COPB1P53618 AL032819.2-201ENST00000624543 2162 ntBASIC21.64■■□□□ 1.06
COPB1P53618 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COPB1P53618 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
COPB1P53618 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
COPB1P53618 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COPB1P53618 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COPB1P53618 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
COPB1P53618 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COPB1P53618 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
COPB1P53618 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COPB1P53618 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COPB1P53618 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COPB1P53618 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.64■■□□□ 1.05
COPB1P53618 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COPB1P53618 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.64■■□□□ 1.05
COPB1P53618 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COPB1P53618 C2orf69P4-201ENST00000565394 541 ntBASIC21.64■■□□□ 1.05
COPB1P53618 RARRES2P6-201ENST00000567333 442 ntBASIC21.64■■□□□ 1.05
COPB1P53618 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.64■■□□□ 1.05
COPB1P53618 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.64■■□□□ 1.05
COPB1P53618 AC008694.1-202ENST00000636953 945 ntBASIC21.64■■□□□ 1.05
COPB1P53618 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COPB1P53618 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.64■■□□□ 1.05
COPB1P53618 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.64■■□□□ 1.05
COPB1P53618 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC21.64■■□□□ 1.05
COPB1P53618 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COPB1P53618 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COPB1P53618 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COPB1P53618 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COPB1P53618 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COPB1P53618 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.63■■□□□ 1.05
COPB1P53618 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
COPB1P53618 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COPB1P53618 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 138.9 ms