Protein–RNA interactions for Protein: Q12200

NCR1, NPC intracellular cholesterol transporter 1-related protein 1, yeastyeast

Predictions only

Length 1,170 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
NCR1Q12200 SEC31YDL195W 3822 nt2.03□□□□□ -2.08
NCR1Q12200 SWI4YER111C 3282 nt2.02□□□□□ -2.09
NCR1Q12200 CLU1YMR012W 3834 nt1.99□□□□□ -2.09
NCR1Q12200 MYO1YHR023W 5787 nt1.98□□□□□ -2.09
NCR1Q12200 YOR093CYOR093C 4947 nt1.98□□□□□ -2.09
NCR1Q12200 NEO1YIL048W 3456 nt1.98□□□□□ -2.09
NCR1Q12200 MLP2YIL149C 5040 nt1.97□□□□□ -2.09
NCR1Q12200 TRM732YMR259C 4263 nt1.96□□□□□ -2.1
NCR1Q12200 NUP145YGL092W 3954 nt1.96□□□□□ -2.1
NCR1Q12200 YMR247W-AYMR247W-A 144 nt1.95□□□□□ -2.1
NCR1Q12200 DNF3YMR162C 4971 nt1.93□□□□□ -2.1
NCR1Q12200 LAA1YJL207C 6045 nt1.92□□□□□ -2.1
NCR1Q12200 YNL284C-BYNL284C-B 5268 nt1.91□□□□□ -2.1
NCR1Q12200 snR77snR77 88 nt1.91□□□□□ -2.1
NCR1Q12200 YMR045CYMR045C 5268 nt1.89□□□□□ -2.11
NCR1Q12200 PEP1YBL017C 4740 nt1.88□□□□□ -2.11
NCR1Q12200 MON2YNL297C 4911 nt1.87□□□□□ -2.11
NCR1Q12200 PMD1YER132C 5262 nt1.86□□□□□ -2.11
NCR1Q12200 FIG2YCR089W 4830 nt1.86□□□□□ -2.11
NCR1Q12200 NUP188YML103C 4968 nt1.85□□□□□ -2.11
NCR1Q12200 CDC39YCR093W 6327 nt1.84□□□□□ -2.11
NCR1Q12200 SOV1YMR066W 2697 nt1.84□□□□□ -2.11
NCR1Q12200 TMA7YLR262C-A 195 nt1.81□□□□□ -2.12
NCR1Q12200 BST1YFL025C 3090 nt1.8□□□□□ -2.12
NCR1Q12200 VAM6YDL077C 3150 nt1.8□□□□□ -2.12
NCR1Q12200 CFT1YDR301W 4074 nt1.79□□□□□ -2.12
NCR1Q12200 SPT7YBR081C 3999 nt1.79□□□□□ -2.12
NCR1Q12200 YOR316C-AYOR316C-A 210 nt1.78□□□□□ -2.12
NCR1Q12200 YPR117WYPR117W 7470 nt1.76□□□□□ -2.13
NCR1Q12200 YGR130CYGR130C 2451 nt1.76□□□□□ -2.13
NCR1Q12200 tT(UGU)HtT(UGU)H 72 nt1.76□□□□□ -2.13
NCR1Q12200 MEC1YBR136W 7107 nt1.71□□□□□ -2.14
NCR1Q12200 IRA1YBR140C 9279 nt1.71□□□□□ -2.14
NCR1Q12200 SSK2YNR031C 4740 nt1.7□□□□□ -2.14
NCR1Q12200 SBH2YER019C-A 267 nt1.69□□□□□ -2.14
NCR1Q12200 VPS15YBR097W 4365 nt1.65□□□□□ -2.15
NCR1Q12200 BRR2YER172C 6492 nt1.61□□□□□ -2.15
NCR1Q12200 tC(GCA)QtC(GCA)Q 76 nt1.6□□□□□ -2.15
NCR1Q12200 YOR192C-BYOR192C-B 5313 nt1.59□□□□□ -2.15
NCR1Q12200 tQ(UUG)E2tQ(UUG)E2 72 nt1.55□□□□□ -2.16
NCR1Q12200 tH(GUG)E1tH(GUG)E1 72 nt1.45□□□□□ -2.18
NCR1Q12200 tH(GUG)E2tH(GUG)E2 72 nt1.45□□□□□ -2.18
NCR1Q12200 tH(GUG)G1tH(GUG)G1 72 nt1.45□□□□□ -2.18
NCR1Q12200 tH(GUG)G2tH(GUG)G2 72 nt1.45□□□□□ -2.18
NCR1Q12200 tH(GUG)HtH(GUG)H 72 nt1.45□□□□□ -2.18
NCR1Q12200 tH(GUG)KtH(GUG)K 72 nt1.45□□□□□ -2.18
NCR1Q12200 tH(GUG)MtH(GUG)M 72 nt1.45□□□□□ -2.18
NCR1Q12200 RPL41BYDL133C-A 78 nt1.44□□□□□ -2.18
NCR1Q12200 RKR1YMR247C 4689 nt1.43□□□□□ -2.18
NCR1Q12200 BUD3YCL014W 4911 nt1.43□□□□□ -2.18
NCR1Q12200 CCH1YGR217W 6120 nt1.42□□□□□ -2.18
NCR1Q12200 YOL014WYOL014W 375 nt1.42□□□□□ -2.18
NCR1Q12200 HKR1YDR420W 5409 nt1.41□□□□□ -2.18
NCR1Q12200 YBL100W-BYBL100W-B 5313 nt1.4□□□□□ -2.19
NCR1Q12200 YML100W-AYML100W-A 174 nt1.39□□□□□ -2.19
NCR1Q12200 LTE1YAL024C 4308 nt1.36□□□□□ -2.19
NCR1Q12200 THO2YNL139C 4794 nt1.31□□□□□ -2.2
NCR1Q12200 YKL145W-AYKL145W-A 93 nt1.29□□□□□ -2.2
NCR1Q12200 PAU24YBR301W 363 nt1.28□□□□□ -2.2
NCR1Q12200 IML1YJR138W 4755 nt1.28□□□□□ -2.2
NCR1Q12200 tV(UAC)BtV(UAC)B 74 nt1.27□□□□□ -2.21
NCR1Q12200 tV(UAC)DtV(UAC)D 74 nt1.27□□□□□ -2.21
NCR1Q12200 YOR335W-AYOR335W-A 81 nt1.27□□□□□ -2.21
NCR1Q12200 YJR029WYJR029W 5268 nt1.25□□□□□ -2.21
NCR1Q12200 BEM2YER155C 6504 nt1.24□□□□□ -2.21
NCR1Q12200 YJL113WYJL113W 4647 nt1.22□□□□□ -2.21
NCR1Q12200 SCC2YDR180W 4482 nt1.22□□□□□ -2.21
NCR1Q12200 ESP1YGR098C 4893 nt1.21□□□□□ -2.22
NCR1Q12200 snR58snR58 96 nt1.19□□□□□ -2.22
NCR1Q12200 snR6snR6 112 nt1.17□□□□□ -2.22
NCR1Q12200 YPR137C-BYPR137C-B 5268 nt1.13□□□□□ -2.23
NCR1Q12200 FMP27YLR454W 7887 nt1.1□□□□□ -2.23
NCR1Q12200 DOP1YDR141C 5097 nt1.1□□□□□ -2.23
NCR1Q12200 MLP1YKR095W 5628 nt1.05□□□□□ -2.24
NCR1Q12200 snR73snR73 106 nt1.05□□□□□ -2.24
NCR1Q12200 YOR186C-AYOR186C-A 210 nt1.05□□□□□ -2.24
NCR1Q12200 PAU9YBL108C-A 129 nt0.99□□□□□ -2.25
NCR1Q12200 EMT1tM(CAU)D 73 nt0.98□□□□□ -2.25
NCR1Q12200 EMT5tM(CAU)J1 73 nt0.98□□□□□ -2.25
NCR1Q12200 EMT3tM(CAU)J2 73 nt0.98□□□□□ -2.25
NCR1Q12200 EMT4tM(CAU)M 73 nt0.98□□□□□ -2.25
NCR1Q12200 EMT2tM(CAU)O2 73 nt0.98□□□□□ -2.25
NCR1Q12200 YMR272W-AYMR272W-A 114 nt0.91□□□□□ -2.26
NCR1Q12200 IQG1YPL242C 4488 nt0.89□□□□□ -2.27
NCR1Q12200 tF(GAA)BtF(GAA)B 73 nt0.83□□□□□ -2.28
NCR1Q12200 tF(GAA)FtF(GAA)F 73 nt0.83□□□□□ -2.28
NCR1Q12200 tF(GAA)GtF(GAA)G 73 nt0.83□□□□□ -2.28
NCR1Q12200 tF(GAA)H1tF(GAA)H1 73 nt0.83□□□□□ -2.28
NCR1Q12200 tF(GAA)H2tF(GAA)H2 73 nt0.83□□□□□ -2.28
NCR1Q12200 tF(GAA)MtF(GAA)M 73 nt0.83□□□□□ -2.28
NCR1Q12200 tF(GAA)P1tF(GAA)P1 73 nt0.83□□□□□ -2.28
NCR1Q12200 tF(GAA)P2tF(GAA)P2 73 nt0.83□□□□□ -2.28
NCR1Q12200 UTP20YBL004W 7482 nt0.81□□□□□ -2.28
NCR1Q12200 snR161snR161 161 nt0.8□□□□□ -2.28
NCR1Q12200 tT(AGU)BtT(AGU)B 73 nt0.79□□□□□ -2.28
NCR1Q12200 tT(AGU)CtT(AGU)C 73 nt0.79□□□□□ -2.28
NCR1Q12200 tT(AGU)DtT(AGU)D 73 nt0.79□□□□□ -2.28
NCR1Q12200 tT(AGU)HtT(AGU)H 73 nt0.79□□□□□ -2.28
NCR1Q12200 tT(AGU)I1tT(AGU)I1 73 nt0.79□□□□□ -2.28
NCR1Q12200 tT(AGU)I2tT(AGU)I2 73 nt0.79□□□□□ -2.28
Retrieved 100 of 7,029 protein–RNA pairs in 18.1 ms