Protein–RNA interactions for Protein: Q08474

VAM10, Vacuolar morphogenesis protein 10, yeast

Predictions only

Length 114 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
VAM10	Q08474	YOR008C-A	YOR008C-A	225 nt		-1.17	□□□□□ -2.6
VAM10	Q08474	Q0017	Q0017	162 nt		-1.17	□□□□□ -2.6
VAM10	Q08474	tP(UGG)Q	tP(UGG)Q	72 nt		-1.18	□□□□□ -2.6
VAM10	Q08474	YPL038W-A	YPL038W-A	192 nt		-1.18	□□□□□ -2.6
VAM10	Q08474	YBR131C-A	YBR131C-A	90 nt		-1.19	□□□□□ -2.6
VAM10	Q08474	snR39B	snR39B	96 nt		-1.19	□□□□□ -2.6
VAM10	Q08474	YDR157W	YDR157W	402 nt		-1.2	□□□□□ -2.6
VAM10	Q08474	SKI7	YOR076C	2244 nt		-1.2	□□□□□ -2.6
VAM10	Q08474	YLR222C-A	YLR222C-A	231 nt		-1.22	□□□□□ -2.6
VAM10	Q08474	snR67	snR67	82 nt		-1.23	□□□□□ -2.61
VAM10	Q08474	YDR413C	YDR413C	576 nt		-1.23	□□□□□ -2.61
VAM10	Q08474	YDR118W-A	YDR118W-A	117 nt		-1.24	□□□□□ -2.61
VAM10	Q08474	YER181C	YER181C	324 nt		-1.24	□□□□□ -2.61
VAM10	Q08474	YOR329W-A	YOR329W-A	210 nt		-1.26	□□□□□ -2.61
VAM10	Q08474	tD(GUC)Q	tD(GUC)Q	75 nt		-1.27	□□□□□ -2.61
VAM10	Q08474	RPL39	YJL189W	156 nt		-1.27	□□□□□ -2.61
VAM10	Q08474	YNL097C-B	YNL097C-B	123 nt		-1.27	□□□□□ -2.61
VAM10	Q08474	YNL277W-A	YNL277W-A	189 nt		-1.27	□□□□□ -2.61
VAM10	Q08474	YLR286W-A	YLR286W-A	135 nt		-1.3	□□□□□ -2.62
VAM10	Q08474	YDL240C-A	YDL240C-A	138 nt		-1.31	□□□□□ -2.62
VAM10	Q08474	YKL118W	YKL118W	312 nt		-1.34	□□□□□ -2.62
VAM10	Q08474	YBR178W	YBR178W	375 nt		-1.35	□□□□□ -2.63
VAM10	Q08474	YDL159C-B	YDL159C-B	177 nt		-1.38	□□□□□ -2.63
VAM10	Q08474	snR55	snR55	98 nt		-1.39	□□□□□ -2.63
VAM10	Q08474	YML054C-A	YML054C-A	159 nt		-1.39	□□□□□ -2.63
VAM10	Q08474	VAR1	Q0140	1197 nt		-1.4	□□□□□ -2.63
VAM10	Q08474	YNL205C	YNL205C	423 nt		-1.41	□□□□□ -2.64
VAM10	Q08474	CDC65	tQ(CUG)M	72 nt		-1.42	□□□□□ -2.64
VAM10	Q08474	snR48	snR48	113 nt		-1.43	□□□□□ -2.64
VAM10	Q08474	snR77	snR77	88 nt		-1.44	□□□□□ -2.64
VAM10	Q08474	YPR012W	YPR012W	255 nt		-1.44	□□□□□ -2.64
VAM10	Q08474	GIM4	YEL003W	336 nt		-1.45	□□□□□ -2.64
VAM10	Q08474	YOR302W	YOR302W	78 nt		-1.45	□□□□□ -2.64
VAM10	Q08474	tL(UAA)Q	tL(UAA)Q	85 nt		-1.49	□□□□□ -2.65
VAM10	Q08474	YGR240C-A	YGR240C-A	201 nt		-1.49	□□□□□ -2.65
VAM10	Q08474	tY(GUA)Q	tY(GUA)Q	84 nt		-1.51	□□□□□ -2.65
VAM10	Q08474	YOL155W-A	YOL155W-A	135 nt		-1.51	□□□□□ -2.65
VAM10	Q08474	YOR102W	YOR102W	351 nt		-1.53	□□□□□ -2.65
VAM10	Q08474	YLR299C-A	YLR299C-A	93 nt		-1.54	□□□□□ -2.66
VAM10	Q08474	YGL188C-A	YGL188C-A	141 nt		-1.56	□□□□□ -2.66
VAM10	Q08474	YPL152W-A	YPL152W-A	99 nt		-1.58	□□□□□ -2.66
VAM10	Q08474	YBR196C-A	YBR196C-A	150 nt		-1.6	□□□□□ -2.67
VAM10	Q08474	snR81	snR81	201 nt		-1.62	□□□□□ -2.67
VAM10	Q08474	YOR376W-A	YOR376W-A	156 nt		-1.62	□□□□□ -2.67
VAM10	Q08474	snR65	snR65	100 nt		-1.64	□□□□□ -2.67
VAM10	Q08474	YMR315W-A	YMR315W-A	108 nt		-1.64	□□□□□ -2.67
VAM10	Q08474	YLR342W-A	YLR342W-A	174 nt		-1.65	□□□□□ -2.67
VAM10	Q08474	snR52	snR52	92 nt		-1.65	□□□□□ -2.67
VAM10	Q08474	YHL015W-A	YHL015W-A	84 nt		-1.69	□□□□□ -2.68
VAM10	Q08474	YHR180C-B	YHR180C-B	105 nt		-1.76	□□□□□ -2.69
VAM10	Q08474	Q0144	Q0144	330 nt		-1.79	□□□□□ -2.7
VAM10	Q08474	snR80	snR80	171 nt		-1.8	□□□□□ -2.7
VAM10	Q08474	YNL198C	YNL198C	303 nt		-1.8	□□□□□ -2.7
VAM10	Q08474	YOR316C-A	YOR316C-A	210 nt		-1.82	□□□□□ -2.7
VAM10	Q08474	YJL150W	YJL150W	303 nt		-1.86	□□□□□ -2.71
VAM10	Q08474	YOR231C-A	YOR231C-A	201 nt		-1.87	□□□□□ -2.71
VAM10	Q08474	YKL106C-A	YKL106C-A	120 nt		-1.88	□□□□□ -2.71
VAM10	Q08474	YOR309C	YOR309C	381 nt		-1.91	□□□□□ -2.72
VAM10	Q08474	YHR175W-A	YHR175W-A	150 nt		-1.92	□□□□□ -2.72
VAM10	Q08474	snR56	snR56	88 nt		-1.94	□□□□□ -2.72
VAM10	Q08474	YBL053W	YBL053W	375 nt		-1.94	□□□□□ -2.72
VAM10	Q08474	YBR109W-A	YBR109W-A	225 nt		-1.95	□□□□□ -2.72
VAM10	Q08474	SOM1	YEL059C-A	225 nt		-1.96	□□□□□ -2.72
VAM10	Q08474	tR(ACG)Q2	tR(ACG)Q2	74 nt		-1.98	□□□□□ -2.73
VAM10	Q08474	YDR406W-A	YDR406W-A	246 nt		-2.01	□□□□□ -2.73
VAM10	Q08474	YCR095W-A	YCR095W-A	159 nt		-2.05	□□□□□ -2.74
VAM10	Q08474	RPL41A	YDL184C	78 nt		-2.05	□□□□□ -2.74
VAM10	Q08474	snR38	snR38	95 nt		-2.05	□□□□□ -2.74
VAM10	Q08474	YBR296C-A	YBR296C-A	120 nt		-2.05	□□□□□ -2.74
VAM10	Q08474	YBR126W-B	YBR126W-B	144 nt		-2.13	□□□□□ -2.75
VAM10	Q08474	snR6	snR6	112 nt		-2.15	□□□□□ -2.75
VAM10	Q08474	YBL071C-B	YBL071C-B	99 nt		-2.16	□□□□□ -2.76
VAM10	Q08474	YGR151C	YGR151C	336 nt		-2.19	□□□□□ -2.76
VAM10	Q08474	YOL083C-A	YOL083C-A	141 nt		-2.2	□□□□□ -2.76
VAM10	Q08474	YDR524W-C	YDR524W-C	90 nt		-2.21	□□□□□ -2.76
VAM10	Q08474	YOL164W-A	YOL164W-A	183 nt		-2.24	□□□□□ -2.77
VAM10	Q08474	YOR335W-A	YOR335W-A	81 nt		-2.32	□□□□□ -2.78
VAM10	Q08474	snR73	snR73	106 nt		-2.34	□□□□□ -2.78
VAM10	Q08474	snR47	snR47	99 nt		-2.35	□□□□□ -2.79
VAM10	Q08474	YAL037C-A	YAL037C-A	93 nt		-2.36	□□□□□ -2.79
VAM10	Q08474	RPL41B	YDL133C-A	78 nt		-2.39	□□□□□ -2.79
VAM10	Q08474	YMR046W-A	YMR046W-A	129 nt		-2.4	□□□□□ -2.79
VAM10	Q08474	YBL100W-C	YBL100W-C	120 nt		-2.42	□□□□□ -2.8
VAM10	Q08474	YCL001W-B	YCL001W-B	255 nt		-2.42	□□□□□ -2.8
VAM10	Q08474	SPG3	YDR504C	384 nt		-2.48	□□□□□ -2.81
VAM10	Q08474	tV(UAC)Q	tV(UAC)Q	76 nt		-2.49	□□□□□ -2.81
VAM10	Q08474	YKL225W	YKL225W	348 nt		-2.54	□□□□□ -2.82
VAM10	Q08474	YDR543C	YDR543C	300 nt		-2.55	□□□□□ -2.82
VAM10	Q08474	tS(GCU)Q1	tS(GCU)Q1	86 nt		-2.56	□□□□□ -2.82
VAM10	Q08474	YDL114W-A	YDL114W-A	114 nt		-2.57	□□□□□ -2.82
VAM10	Q08474	snR85	snR85	171 nt		-2.64	□□□□□ -2.83
VAM10	Q08474	YLR466C-B	YLR466C-B	117 nt		-2.64	□□□□□ -2.83
VAM10	Q08474	YNL337W	YNL337W	255 nt		-2.66	□□□□□ -2.84
VAM10	Q08474	tM(CAU)Q1	tM(CAU)Q1	76 nt		-2.7	□□□□□ -2.84
VAM10	Q08474	YOL166W-A	YOL166W-A	156 nt		-2.7	□□□□□ -2.84
VAM10	Q08474	YNL338W	YNL338W	159 nt		-2.74	□□□□□ -2.85
VAM10	Q08474	YDR524C-A	YDR524C-A	120 nt		-2.79	□□□□□ -2.86
VAM10	Q08474	YDL159W-A	YDL159W-A	132 nt		-2.85	□□□□□ -2.87
VAM10	Q08474	YDR034C-A	YDR034C-A	177 nt		-2.88	□□□□□ -2.87
VAM10	Q08474	YGL007C-A	YGL007C-A	87 nt		-2.88	□□□□□ -2.87

Retrieved 100 of 7,029 protein–RNA pairs in 90.3 ms