Protein–RNA interactions for Protein: P53972

RCM1, 25S rRNA (cytosine(2278)-C(5))-methyltransferase, yeastyeast

Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RCM1P53972 MSN5YDR335W 3675 nt1.51□□□□□ -2.17
RCM1P53972 EST1YLR233C 2100 nt1.5□□□□□ -2.17
RCM1P53972 YLR299C-AYLR299C-A 93 nt1.5□□□□□ -2.17
RCM1P53972 snR69snR69 101 nt1.47□□□□□ -2.17
RCM1P53972 snR50snR50 90 nt1.46□□□□□ -2.18
RCM1P53972 YKL225WYKL225W 348 nt1.45□□□□□ -2.18
RCM1P53972 CSE1YGL238W 2883 nt1.44□□□□□ -2.18
RCM1P53972 YDL159C-BYDL159C-B 177 nt1.44□□□□□ -2.18
RCM1P53972 EST2YLR318W 2655 nt1.43□□□□□ -2.18
RCM1P53972 NST1YNL091W 3723 nt1.41□□□□□ -2.18
RCM1P53972 CLU1YMR012W 3834 nt1.41□□□□□ -2.18
RCM1P53972 RDS3YPR094W 324 nt1.39□□□□□ -2.19
RCM1P53972 YBR109W-AYBR109W-A 225 nt1.39□□□□□ -2.19
RCM1P53972 YML054C-AYML054C-A 159 nt1.38□□□□□ -2.19
RCM1P53972 BEM2YER155C 6504 nt1.35□□□□□ -2.19
RCM1P53972 YHR180C-BYHR180C-B 105 nt1.33□□□□□ -2.2
RCM1P53972 RPL41AYDL184C 78 nt1.32□□□□□ -2.2
RCM1P53972 tF(GAA)BtF(GAA)B 73 nt1.32□□□□□ -2.2
RCM1P53972 tF(GAA)FtF(GAA)F 73 nt1.32□□□□□ -2.2
RCM1P53972 tF(GAA)GtF(GAA)G 73 nt1.32□□□□□ -2.2
RCM1P53972 tF(GAA)H1tF(GAA)H1 73 nt1.32□□□□□ -2.2
RCM1P53972 tF(GAA)H2tF(GAA)H2 73 nt1.32□□□□□ -2.2
RCM1P53972 tF(GAA)MtF(GAA)M 73 nt1.32□□□□□ -2.2
RCM1P53972 tF(GAA)P1tF(GAA)P1 73 nt1.32□□□□□ -2.2
RCM1P53972 tF(GAA)P2tF(GAA)P2 73 nt1.32□□□□□ -2.2
RCM1P53972 snR38snR38 95 nt1.32□□□□□ -2.2
RCM1P53972 YLL006W-AYLL006W-A 177 nt1.31□□□□□ -2.2
RCM1P53972 NIP1YMR309C 2439 nt1.31□□□□□ -2.2
RCM1P53972 SPT7YBR081C 3999 nt1.3□□□□□ -2.2
RCM1P53972 BUL2YML111W 2763 nt1.29□□□□□ -2.2
RCM1P53972 YJL077W-AYJL077W-A 87 nt1.29□□□□□ -2.2
RCM1P53972 YBR296C-AYBR296C-A 120 nt1.29□□□□□ -2.2
RCM1P53972 AI1Q0050 2505 nt1.28□□□□□ -2.2
RCM1P53972 YLR149C-AYLR149C-A 87 nt1.27□□□□□ -2.21
RCM1P53972 BUD3YCL014W 4911 nt1.26□□□□□ -2.21
RCM1P53972 YDL159W-AYDL159W-A 132 nt1.25□□□□□ -2.21
RCM1P53972 YNL284C-BYNL284C-B 5268 nt1.24□□□□□ -2.21
RCM1P53972 SCC2YDR180W 4482 nt1.24□□□□□ -2.21
RCM1P53972 DOP1YDR141C 5097 nt1.23□□□□□ -2.21
RCM1P53972 YKL096C-BYKL096C-B 150 nt1.22□□□□□ -2.21
RCM1P53972 YNL054W-BYNL054W-B 5250 nt1.21□□□□□ -2.22
RCM1P53972 YPR117WYPR117W 7470 nt1.2□□□□□ -2.22
RCM1P53972 SKI7YOR076C 2244 nt1.19□□□□□ -2.22
RCM1P53972 tQ(UUG)QtQ(UUG)Q 76 nt1.19□□□□□ -2.22
RCM1P53972 MYO1YHR023W 5787 nt1.17□□□□□ -2.22
RCM1P53972 RKR1YMR247C 4689 nt1.15□□□□□ -2.23
RCM1P53972 VAM6YDL077C 3150 nt1.14□□□□□ -2.23
RCM1P53972 YGR122C-AYGR122C-A 129 nt1.13□□□□□ -2.23
RCM1P53972 YER090C-AYER090C-A 90 nt1.12□□□□□ -2.23
RCM1P53972 YOR192C-BYOR192C-B 5313 nt1.1□□□□□ -2.23
RCM1P53972 YOL014WYOL014W 375 nt1.1□□□□□ -2.23
RCM1P53972 UTP20YBL004W 7482 nt1.09□□□□□ -2.23
RCM1P53972 YER078W-AYER078W-A 165 nt1.09□□□□□ -2.23
RCM1P53972 snR75snR75 89 nt1.07□□□□□ -2.24
RCM1P53972 YMR160WYMR160W 2451 nt1.07□□□□□ -2.24
RCM1P53972 EMT1tM(CAU)D 73 nt1.06□□□□□ -2.24
RCM1P53972 EMT5tM(CAU)J1 73 nt1.06□□□□□ -2.24
RCM1P53972 EMT3tM(CAU)J2 73 nt1.06□□□□□ -2.24
RCM1P53972 EMT4tM(CAU)M 73 nt1.06□□□□□ -2.24
RCM1P53972 EMT2tM(CAU)O2 73 nt1.06□□□□□ -2.24
RCM1P53972 YJR029WYJR029W 5268 nt1.03□□□□□ -2.24
RCM1P53972 YPR137C-BYPR137C-B 5268 nt1.03□□□□□ -2.24
RCM1P53972 tT(AGU)BtT(AGU)B 73 nt1□□□□□ -2.25
RCM1P53972 tT(AGU)CtT(AGU)C 73 nt1□□□□□ -2.25
RCM1P53972 tT(AGU)DtT(AGU)D 73 nt1□□□□□ -2.25
RCM1P53972 tT(AGU)HtT(AGU)H 73 nt1□□□□□ -2.25
RCM1P53972 tT(AGU)I1tT(AGU)I1 73 nt1□□□□□ -2.25
RCM1P53972 tT(AGU)I2tT(AGU)I2 73 nt1□□□□□ -2.25
RCM1P53972 tT(AGU)JtT(AGU)J 73 nt1□□□□□ -2.25
RCM1P53972 tT(AGU)N1tT(AGU)N1 73 nt1□□□□□ -2.25
RCM1P53972 tT(AGU)N2tT(AGU)N2 73 nt1□□□□□ -2.25
RCM1P53972 tT(AGU)O1tT(AGU)O1 73 nt1□□□□□ -2.25
RCM1P53972 tT(AGU)O2tT(AGU)O2 73 nt1□□□□□ -2.25
RCM1P53972 YKL145W-AYKL145W-A 93 nt1□□□□□ -2.25
RCM1P53972 snR67snR67 82 nt0.97□□□□□ -2.25
RCM1P53972 PET111YMR257C 2403 nt0.95□□□□□ -2.26
RCM1P53972 YBL100W-BYBL100W-B 5313 nt0.91□□□□□ -2.26
RCM1P53972 LTE1YAL024C 4308 nt0.89□□□□□ -2.27
RCM1P53972 FMP27YLR454W 7887 nt0.81□□□□□ -2.28
RCM1P53972 MLP2YIL149C 5040 nt0.77□□□□□ -2.29
RCM1P53972 YKL106C-AYKL106C-A 120 nt0.77□□□□□ -2.29
RCM1P53972 MLP1YKR095W 5628 nt0.75□□□□□ -2.29
RCM1P53972 YDL114W-AYDL114W-A 114 nt0.73□□□□□ -2.29
RCM1P53972 YPR159C-AYPR159C-A 102 nt0.73□□□□□ -2.29
RCM1P53972 tV(UAC)QtV(UAC)Q 76 nt0.69□□□□□ -2.3
RCM1P53972 YML100W-AYML100W-A 174 nt0.67□□□□□ -2.3
RCM1P53972 YOR186C-AYOR186C-A 210 nt0.67□□□□□ -2.3
RCM1P53972 YMR272W-AYMR272W-A 114 nt0.66□□□□□ -2.3
RCM1P53972 IQG1YPL242C 4488 nt0.64□□□□□ -2.31
RCM1P53972 UTP10YJL109C 5310 nt0.61□□□□□ -2.31
RCM1P53972 YOR376W-AYOR376W-A 156 nt0.58□□□□□ -2.32
RCM1P53972 SOV1YMR066W 2697 nt0.57□□□□□ -2.32
RCM1P53972 YOR316C-AYOR316C-A 210 nt0.5□□□□□ -2.33
RCM1P53972 THO2YNL139C 4794 nt0.5□□□□□ -2.33
RCM1P53972 ESP1YGR098C 4893 nt0.49□□□□□ -2.33
RCM1P53972 snR77snR77 88 nt0.45□□□□□ -2.34
RCM1P53972 SBH2YER019C-A 267 nt0.41□□□□□ -2.34
RCM1P53972 snR128snR128 126 nt0.38□□□□□ -2.35
RCM1P53972 snR40snR40 97 nt0.36□□□□□ -2.35
RCM1P53972 PAU9YBL108C-A 129 nt0.35□□□□□ -2.35
Retrieved 100 of 7,029 protein–RNA pairs in 81.6 ms