Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 AC145350.3-201ENST00000569033 163 ntBASIC21.81■■□□□ 1.08
COPB1P53618 AL031963.3-201ENST00000606441 850 ntBASIC21.81■■□□□ 1.08
COPB1P53618 AC087623.3-201ENST00000607047 1098 ntBASIC21.81■■□□□ 1.08
COPB1P53618 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.81■■□□□ 1.08
COPB1P53618 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC21.81■■□□□ 1.08
COPB1P53618 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
COPB1P53618 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
COPB1P53618 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COPB1P53618 AC068338.2-201ENST00000563278 1430 ntBASIC21.8■■□□□ 1.08
COPB1P53618 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COPB1P53618 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
COPB1P53618 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COPB1P53618 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COPB1P53618 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COPB1P53618 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COPB1P53618 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.8■■□□□ 1.08
COPB1P53618 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
COPB1P53618 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.8■■□□□ 1.08
COPB1P53618 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.8■■□□□ 1.08
COPB1P53618 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
COPB1P53618 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.8■■□□□ 1.08
COPB1P53618 MIR6821-201ENST00000617625 74 ntBASIC21.8■■□□□ 1.08
COPB1P53618 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.8■■□□□ 1.08
COPB1P53618 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
COPB1P53618 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.8■■□□□ 1.08
COPB1P53618 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COPB1P53618 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.8■■□□□ 1.08
COPB1P53618 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COPB1P53618 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COPB1P53618 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COPB1P53618 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.79■■□□□ 1.08
COPB1P53618 DUX4L16-201ENST00000555130 1264 ntBASIC21.79■■□□□ 1.08
COPB1P53618 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.79■■□□□ 1.08
COPB1P53618 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.79■■□□□ 1.08
COPB1P53618 AC105020.6-201ENST00000621523 1217 ntBASIC21.79■■□□□ 1.08
COPB1P53618 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
COPB1P53618 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.79■■□□□ 1.08
COPB1P53618 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
COPB1P53618 AP000974.1-201ENST00000623909 2387 ntBASIC21.79■■□□□ 1.08
COPB1P53618 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COPB1P53618 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COPB1P53618 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.78■■□□□ 1.08
COPB1P53618 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC21.78■■□□□ 1.08
COPB1P53618 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COPB1P53618 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COPB1P53618 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COPB1P53618 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.78■■□□□ 1.08
COPB1P53618 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
COPB1P53618 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COPB1P53618 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COPB1P53618 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COPB1P53618 KRT16P6-202ENST00000425692 1426 ntBASIC21.78■■□□□ 1.08
COPB1P53618 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
COPB1P53618 AL020996.1-203ENST00000536896 2307 ntBASIC21.78■■□□□ 1.08
COPB1P53618 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COPB1P53618 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COPB1P53618 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC21.78■■□□□ 1.08
COPB1P53618 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COPB1P53618 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COPB1P53618 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.77■■□□□ 1.08
COPB1P53618 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC21.77■■□□□ 1.08
COPB1P53618 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
COPB1P53618 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COPB1P53618 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
COPB1P53618 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
COPB1P53618 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.77■■□□□ 1.08
COPB1P53618 KRT18P68-201ENST00000392293 1000 ntBASIC21.77■■□□□ 1.08
COPB1P53618 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.77■■□□□ 1.08
COPB1P53618 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COPB1P53618 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COPB1P53618 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.77■■□□□ 1.08
COPB1P53618 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.77■■□□□ 1.08
COPB1P53618 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.77■■□□□ 1.08
COPB1P53618 KRT8P20-201ENST00000423953 1409 ntBASIC21.77■■□□□ 1.08
COPB1P53618 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
COPB1P53618 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COPB1P53618 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COPB1P53618 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COPB1P53618 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.77■■□□□ 1.08
COPB1P53618 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.77■■□□□ 1.07
COPB1P53618 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COPB1P53618 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COPB1P53618 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COPB1P53618 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.76■■□□□ 1.07
COPB1P53618 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
COPB1P53618 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
COPB1P53618 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
COPB1P53618 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
COPB1P53618 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
COPB1P53618 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC21.76■■□□□ 1.07
COPB1P53618 KRT18P5-201ENST00000436075 1291 ntBASIC21.76■■□□□ 1.07
COPB1P53618 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
COPB1P53618 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.76■■□□□ 1.07
COPB1P53618 AC011767.1-201ENST00000617410 1153 ntBASIC21.76■■□□□ 1.07
COPB1P53618 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.76■■□□□ 1.07
COPB1P53618 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COPB1P53618 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COPB1P53618 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COPB1P53618 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COPB1P53618 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms