Protein–RNA interactions for Protein: P0C2J7

TY4B-H, Transposon Ty4-H Gag-Pol polyprotein, yeast

Predictions only

Length 1,802 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
TY4B-H	P0C2J7	YAL063C-A	YAL063C-A	291 nt		-1.68	□□□□□ -2.68
TY4B-H	P0C2J7	YOR381W-A	YOR381W-A	168 nt		-1.68	□□□□□ -2.68
TY4B-H	P0C2J7	YGL041C	YGL041C	204 nt		-1.68	□□□□□ -2.68
TY4B-H	P0C2J7	YAL016C-B	YAL016C-B	186 nt		-1.68	□□□□□ -2.68
TY4B-H	P0C2J7	YOR329W-A	YOR329W-A	210 nt		-1.68	□□□□□ -2.68
TY4B-H	P0C2J7	YOR008C-A	YOR008C-A	225 nt		-1.69	□□□□□ -2.68
TY4B-H	P0C2J7	YAL068W-A	YAL068W-A	255 nt		-1.7	□□□□□ -2.68
TY4B-H	P0C2J7	YBR196C-A	YBR196C-A	150 nt		-1.71	□□□□□ -2.68
TY4B-H	P0C2J7	ATP19	YOL077W-A	207 nt		-1.72	□□□□□ -2.68
TY4B-H	P0C2J7	snR78	snR78	87 nt		-1.73	□□□□□ -2.69
TY4B-H	P0C2J7	YDR183C-A	YDR183C-A	258 nt		-1.74	□□□□□ -2.69
TY4B-H	P0C2J7	YOR293C-A	YOR293C-A	150 nt		-1.74	□□□□□ -2.69
TY4B-H	P0C2J7	YDL159C-B	YDL159C-B	177 nt		-1.75	□□□□□ -2.69
TY4B-H	P0C2J7	YLR286W-A	YLR286W-A	135 nt		-1.75	□□□□□ -2.69
TY4B-H	P0C2J7	YJR157W	YJR157W	363 nt		-1.76	□□□□□ -2.69
TY4B-H	P0C2J7	YBR178W	YBR178W	375 nt		-1.77	□□□□□ -2.69
TY4B-H	P0C2J7	YER181C	YER181C	324 nt		-1.82	□□□□□ -2.7
TY4B-H	P0C2J7	YDR413C	YDR413C	576 nt		-1.82	□□□□□ -2.7
TY4B-H	P0C2J7	YOR376W-A	YOR376W-A	156 nt		-1.85	□□□□□ -2.71
TY4B-H	P0C2J7	YBR131C-A	YBR131C-A	90 nt		-1.86	□□□□□ -2.71
TY4B-H	P0C2J7	YPR197C	YPR197C	564 nt		-1.87	□□□□□ -2.71
TY4B-H	P0C2J7	YBR126W-B	YBR126W-B	144 nt		-1.87	□□□□□ -2.71
TY4B-H	P0C2J7	YMR315W-A	YMR315W-A	108 nt		-1.87	□□□□□ -2.71
TY4B-H	P0C2J7	YLR342W-A	YLR342W-A	174 nt		-1.89	□□□□□ -2.71
TY4B-H	P0C2J7	YLR299C-A	YLR299C-A	93 nt		-1.89	□□□□□ -2.71
TY4B-H	P0C2J7	tF(GAA)Q	tF(GAA)Q	75 nt		-1.9	□□□□□ -2.71
TY4B-H	P0C2J7	YEL050W-A	YEL050W-A	192 nt		-1.91	□□□□□ -2.72
TY4B-H	P0C2J7	YHR180C-B	YHR180C-B	105 nt		-1.94	□□□□□ -2.72
TY4B-H	P0C2J7	YPL038W-A	YPL038W-A	192 nt		-1.94	□□□□□ -2.72
TY4B-H	P0C2J7	YDR543C	YDR543C	300 nt		-1.94	□□□□□ -2.72
TY4B-H	P0C2J7	Q0142	Q0142	177 nt		-1.96	□□□□□ -2.72
TY4B-H	P0C2J7	YKL118W	YKL118W	312 nt		-1.96	□□□□□ -2.72
TY4B-H	P0C2J7	YOR309C	YOR309C	381 nt		-1.98	□□□□□ -2.73
TY4B-H	P0C2J7	YOR316C-A	YOR316C-A	210 nt		-1.98	□□□□□ -2.73
TY4B-H	P0C2J7	YLR222C-A	YLR222C-A	231 nt		-2.01	□□□□□ -2.73
TY4B-H	P0C2J7	snR55	snR55	98 nt		-2.02	□□□□□ -2.73
TY4B-H	P0C2J7	YOR102W	YOR102W	351 nt		-2.03	□□□□□ -2.73
TY4B-H	P0C2J7	YNL097C-B	YNL097C-B	123 nt		-2.03	□□□□□ -2.73
TY4B-H	P0C2J7	RPL39	YJL189W	156 nt		-2.09	□□□□□ -2.74
TY4B-H	P0C2J7	snR48	snR48	113 nt		-2.1	□□□□□ -2.74
TY4B-H	P0C2J7	YDR157W	YDR157W	402 nt		-2.1	□□□□□ -2.75
TY4B-H	P0C2J7	tL(UAA)Q	tL(UAA)Q	85 nt		-2.12	□□□□□ -2.75
TY4B-H	P0C2J7	YGL188C-A	YGL188C-A	141 nt		-2.15	□□□□□ -2.75
TY4B-H	P0C2J7	YOR302W	YOR302W	78 nt		-2.15	□□□□□ -2.75
TY4B-H	P0C2J7	YDL240C-A	YDL240C-A	138 nt		-2.16	□□□□□ -2.76
TY4B-H	P0C2J7	YNL277W-A	YNL277W-A	189 nt		-2.17	□□□□□ -2.76
TY4B-H	P0C2J7	YJL150W	YJL150W	303 nt		-2.19	□□□□□ -2.76
TY4B-H	P0C2J7	YNL198C	YNL198C	303 nt		-2.21	□□□□□ -2.76
TY4B-H	P0C2J7	YPR012W	YPR012W	255 nt		-2.24	□□□□□ -2.77
TY4B-H	P0C2J7	YKL106C-A	YKL106C-A	120 nt		-2.26	□□□□□ -2.77
TY4B-H	P0C2J7	RPL41A	YDL184C	78 nt		-2.27	□□□□□ -2.77
TY4B-H	P0C2J7	GIM4	YEL003W	336 nt		-2.3	□□□□□ -2.78
TY4B-H	P0C2J7	YDR524W-C	YDR524W-C	90 nt		-2.33	□□□□□ -2.78
TY4B-H	P0C2J7	YHL015W-A	YHL015W-A	84 nt		-2.33	□□□□□ -2.78
TY4B-H	P0C2J7	snR52	snR52	92 nt		-2.33	□□□□□ -2.78
TY4B-H	P0C2J7	YOL083C-A	YOL083C-A	141 nt		-2.33	□□□□□ -2.78
TY4B-H	P0C2J7	YOL155W-A	YOL155W-A	135 nt		-2.35	□□□□□ -2.79
TY4B-H	P0C2J7	Q0017	Q0017	162 nt		-2.35	□□□□□ -2.79
TY4B-H	P0C2J7	YBR296C-A	YBR296C-A	120 nt		-2.37	□□□□□ -2.79
TY4B-H	P0C2J7	snR80	snR80	171 nt		-2.38	□□□□□ -2.79
TY4B-H	P0C2J7	snR38	snR38	95 nt		-2.38	□□□□□ -2.79
TY4B-H	P0C2J7	YDR118W-A	YDR118W-A	117 nt		-2.38	□□□□□ -2.79
TY4B-H	P0C2J7	YBR109W-A	YBR109W-A	225 nt		-2.4	□□□□□ -2.79
TY4B-H	P0C2J7	snR56	snR56	88 nt		-2.41	□□□□□ -2.8
TY4B-H	P0C2J7	snR6	snR6	112 nt		-2.46	□□□□□ -2.8
TY4B-H	P0C2J7	SOM1	YEL059C-A	225 nt		-2.47	□□□□□ -2.81
TY4B-H	P0C2J7	YPL152W-A	YPL152W-A	99 nt		-2.49	□□□□□ -2.81
TY4B-H	P0C2J7	YCR095W-A	YCR095W-A	159 nt		-2.54	□□□□□ -2.82
TY4B-H	P0C2J7	snR65	snR65	100 nt		-2.54	□□□□□ -2.82
TY4B-H	P0C2J7	YOR335W-A	YOR335W-A	81 nt		-2.54	□□□□□ -2.82
TY4B-H	P0C2J7	VAR1	Q0140	1197 nt		-2.58	□□□□□ -2.82
TY4B-H	P0C2J7	YBL071C-B	YBL071C-B	99 nt		-2.6	□□□□□ -2.83
TY4B-H	P0C2J7	snR73	snR73	106 nt		-2.61	□□□□□ -2.83
TY4B-H	P0C2J7	YGR151C	YGR151C	336 nt		-2.61	□□□□□ -2.83
TY4B-H	P0C2J7	YBL053W	YBL053W	375 nt		-2.64	□□□□□ -2.83
TY4B-H	P0C2J7	YDR406W-A	YDR406W-A	246 nt		-2.65	□□□□□ -2.83
TY4B-H	P0C2J7	RPL41B	YDL133C-A	78 nt		-2.66	□□□□□ -2.84
TY4B-H	P0C2J7	snR47	snR47	99 nt		-2.68	□□□□□ -2.84
TY4B-H	P0C2J7	YOL164W-A	YOL164W-A	183 nt		-2.7	□□□□□ -2.84
TY4B-H	P0C2J7	tV(UAC)Q	tV(UAC)Q	76 nt		-2.76	□□□□□ -2.85
TY4B-H	P0C2J7	YDR524C-A	YDR524C-A	120 nt		-2.78	□□□□□ -2.85
TY4B-H	P0C2J7	YDL114W-A	YDL114W-A	114 nt		-2.8	□□□□□ -2.86
TY4B-H	P0C2J7	YJR162C	YJR162C	351 nt		-2.8	□□□□□ -2.86
TY4B-H	P0C2J7	YNL337W	YNL337W	255 nt		-2.8	□□□□□ -2.86
TY4B-H	P0C2J7	YAL037C-A	YAL037C-A	93 nt		-2.86	□□□□□ -2.87
TY4B-H	P0C2J7	snR85	snR85	171 nt		-2.91	□□□□□ -2.87
TY4B-H	P0C2J7	YOR231C-A	YOR231C-A	201 nt		-2.93	□□□□□ -2.88
TY4B-H	P0C2J7	tS(GCU)Q1	tS(GCU)Q1	86 nt		-2.95	□□□□□ -2.88
TY4B-H	P0C2J7	YKL225W	YKL225W	348 nt		-2.96	□□□□□ -2.88
TY4B-H	P0C2J7	YBL100W-C	YBL100W-C	120 nt		-2.98	□□□□□ -2.89
TY4B-H	P0C2J7	SPG3	YDR504C	384 nt		-3.1	□□□□□ -2.91
TY4B-H	P0C2J7	YHR175W-A	YHR175W-A	150 nt		-3.1	□□□□□ -2.91
TY4B-H	P0C2J7	YGR122C-A	YGR122C-A	129 nt		-3.17	□□□□□ -2.92
TY4B-H	P0C2J7	snR87	snR87	109 nt		-3.18	□□□□□ -2.92
TY4B-H	P0C2J7	YMR046W-A	YMR046W-A	129 nt		-3.18	□□□□□ -2.92
TY4B-H	P0C2J7	YCL001W-B	YCL001W-B	255 nt		-3.22	□□□□□ -2.93
TY4B-H	P0C2J7	YDL159W-A	YDL159W-A	132 nt		-3.23	□□□□□ -2.93
TY4B-H	P0C2J7	snR58	snR58	96 nt		-3.28	□□□□□ -2.94
TY4B-H	P0C2J7	tR(ACG)Q2	tR(ACG)Q2	74 nt		-3.32	□□□□□ -2.94
TY4B-H	P0C2J7	YDR034C-A	YDR034C-A	177 nt		-3.37	□□□□□ -2.95

Retrieved 100 of 7,029 protein–RNA pairs in 27.7 ms