Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 ERO1YML130C 1692 nt12.05□□□□□ -0.48
SSM4P40318 YLR280CYLR280C 351 nt12.05□□□□□ -0.48
SSM4P40318 ERG6YML008C 1152 nt12.05□□□□□ -0.48
SSM4P40318 ENO1YGR254W 1314 nt12.05□□□□□ -0.48
SSM4P40318 SOD2YHR008C 702 nt12.01□□□□□ -0.49
SSM4P40318 PTC6YCR079W 1329 nt11.99□□□□□ -0.49
SSM4P40318 YGR210CYGR210C 1236 nt11.99□□□□□ -0.49
SSM4P40318 CWP2YKL096W-A 279 nt11.99□□□□□ -0.49
SSM4P40318 HTS1YPR033C 1641 nt11.98□□□□□ -0.49
SSM4P40318 SRP102YKL154W 735 nt11.98□□□□□ -0.49
SSM4P40318 YGL114WYGL114W 2178 nt11.98□□□□□ -0.49
SSM4P40318 RIB1YBL033C 1038 nt11.97□□□□□ -0.49
SSM4P40318 GAS1YMR307W 1680 nt11.95□□□□□ -0.5
SSM4P40318 YIA6YIL006W 1122 nt11.94□□□□□ -0.5
SSM4P40318 THI3YDL080C 1830 nt11.94□□□□□ -0.5
SSM4P40318 SBP1YHL034C 885 nt11.93□□□□□ -0.5
SSM4P40318 LEU4YNL104C 1860 nt11.92□□□□□ -0.5
SSM4P40318 PET18YCR020C 648 nt11.91□□□□□ -0.5
SSM4P40318 MDM35YKL053C-A 261 nt11.9□□□□□ -0.5
SSM4P40318 YFR020WYFR020W 699 nt11.89□□□□□ -0.51
SSM4P40318 YPT11YNL304W 1254 nt11.86□□□□□ -0.51
SSM4P40318 YPL108WYPL108W 507 nt11.86□□□□□ -0.51
SSM4P40318 YDR467CYDR467C 327 nt11.86□□□□□ -0.51
SSM4P40318 YMR316C-BYMR316C-B 309 nt11.86□□□□□ -0.51
SSM4P40318 HXT10YFL011W 1641 nt11.85□□□□□ -0.51
SSM4P40318 YJL160CYJL160C 864 nt11.85□□□□□ -0.51
SSM4P40318 GPM1YKL152C 744 nt11.85□□□□□ -0.51
SSM4P40318 YMR007WYMR007W 381 nt11.84□□□□□ -0.51
SSM4P40318 YER152W-AYER152W-A 567 nt11.83□□□□□ -0.52
SSM4P40318 DMA2YNL116W 1569 nt11.82□□□□□ -0.52
SSM4P40318 GGA2YHR108W 1758 nt11.81□□□□□ -0.52
SSM4P40318 tE(CUC)DtE(CUC)D 72 nt11.8□□□□□ -0.52
SSM4P40318 tE(CUC)ItE(CUC)I 72 nt11.8□□□□□ -0.52
SSM4P40318 LSP1YPL004C 1026 nt11.8□□□□□ -0.52
SSM4P40318 EMC3YKL207W 762 nt11.79□□□□□ -0.52
SSM4P40318 POP2YNR052C 1302 nt11.79□□□□□ -0.52
SSM4P40318 UTR5YEL035C 501 nt11.78□□□□□ -0.52
SSM4P40318 RSM7YJR113C 744 nt11.77□□□□□ -0.53
SSM4P40318 NPP2YEL016C 1482 nt11.76□□□□□ -0.53
SSM4P40318 YMR210WYMR210W 1350 nt11.76□□□□□ -0.53
SSM4P40318 YMR166CYMR166C 1107 nt11.73□□□□□ -0.53
SSM4P40318 AGP3YFL055W 1677 nt11.71□□□□□ -0.53
SSM4P40318 YHR218WYHR218W 1812 nt11.7□□□□□ -0.54
SSM4P40318 RNA170RNA170 169 nt11.7□□□□□ -0.54
SSM4P40318 PSD1YNL169C 1503 nt11.7□□□□□ -0.54
SSM4P40318 KRR1YCL059C 951 nt11.69□□□□□ -0.54
SSM4P40318 YBL095WYBL095W 813 nt11.69□□□□□ -0.54
SSM4P40318 MET22YOL064C 1074 nt11.69□□□□□ -0.54
SSM4P40318 CAK1YFL029C 1107 nt11.68□□□□□ -0.54
SSM4P40318 YJR149WYJR149W 1215 nt11.68□□□□□ -0.54
SSM4P40318 OCH1YGL038C 1443 nt11.67□□□□□ -0.54
SSM4P40318 GRH1YDR517W 1119 nt11.66□□□□□ -0.54
SSM4P40318 RCR1YBR005W 642 nt11.66□□□□□ -0.54
SSM4P40318 RPS6AYPL090C 711 nt11.65□□□□□ -0.54
SSM4P40318 RPS6BYBR181C 711 nt11.65□□□□□ -0.54
SSM4P40318 HEL2YDR266C 1920 nt11.64□□□□□ -0.55
SSM4P40318 PAU21YOR394W 495 nt11.64□□□□□ -0.55
SSM4P40318 PAU22YPL282C 495 nt11.64□□□□□ -0.55
SSM4P40318 AAC3YBR085W 924 nt11.64□□□□□ -0.55
SSM4P40318 YMC2YBR104W 990 nt11.64□□□□□ -0.55
SSM4P40318 AAT1YKL106W 1356 nt11.64□□□□□ -0.55
SSM4P40318 BUD20YLR074C 501 nt11.63□□□□□ -0.55
SSM4P40318 MEP1YGR121C 1479 nt11.63□□□□□ -0.55
SSM4P40318 SHC1YER096W 1539 nt11.63□□□□□ -0.55
SSM4P40318 BXI1YNL305C 894 nt11.62□□□□□ -0.55
SSM4P40318 YLR460CYLR460C 1131 nt11.59□□□□□ -0.55
SSM4P40318 MRS4YKR052C 915 nt11.58□□□□□ -0.56
SSM4P40318 TMS1YDR105C 1422 nt11.57□□□□□ -0.56
SSM4P40318 PDC6YGR087C 1692 nt11.57□□□□□ -0.56
SSM4P40318 INH1YDL181W 258 nt11.56□□□□□ -0.56
SSM4P40318 CHS7YHR142W 951 nt11.56□□□□□ -0.56
SSM4P40318 YJL009WYJL009W 327 nt11.56□□□□□ -0.56
SSM4P40318 ADA2YDR448W 1305 nt11.56□□□□□ -0.56
SSM4P40318 MTO1YGL236C 2010 nt11.55□□□□□ -0.56
SSM4P40318 snR86snR86 1004 nt11.55□□□□□ -0.56
SSM4P40318 TPN1YGL186C 1740 nt11.54□□□□□ -0.56
SSM4P40318 KAE1YKR038C 1161 nt11.54□□□□□ -0.56
SSM4P40318 RHO1YPR165W 630 nt11.54□□□□□ -0.56
SSM4P40318 YBR056WYBR056W 1506 nt11.54□□□□□ -0.56
SSM4P40318 RDN37-1RDN37-1 5354 nt11.53□□□□□ -0.56
SSM4P40318 RDN37-2RDN37-2 5354 nt11.53□□□□□ -0.56
SSM4P40318 TRP2YER090W 1524 nt11.53□□□□□ -0.56
SSM4P40318 ELP4YPL101W 1371 nt11.53□□□□□ -0.56
SSM4P40318 tL(UAA)B1tL(UAA)B1 84 nt11.53□□□□□ -0.56
SSM4P40318 tL(UAA)B2tL(UAA)B2 84 nt11.53□□□□□ -0.56
SSM4P40318 tL(UAA)DtL(UAA)D 84 nt11.53□□□□□ -0.56
SSM4P40318 SUP51tL(UAA)J 84 nt11.53□□□□□ -0.56
SSM4P40318 tL(UAA)KtL(UAA)K 84 nt11.53□□□□□ -0.56
SSM4P40318 tL(UAA)LtL(UAA)L 84 nt11.53□□□□□ -0.56
SSM4P40318 tL(UAA)NtL(UAA)N 84 nt11.53□□□□□ -0.56
SSM4P40318 FET5YFL041W 1869 nt11.52□□□□□ -0.56
SSM4P40318 YER156CYER156C 1017 nt11.52□□□□□ -0.57
SSM4P40318 RRT14YIL127C 621 nt11.52□□□□□ -0.57
SSM4P40318 BUB2YMR055C 921 nt11.5□□□□□ -0.57
SSM4P40318 YOR343CYOR343C 327 nt11.49□□□□□ -0.57
SSM4P40318 THI73YLR004C 1572 nt11.48□□□□□ -0.57
SSM4P40318 CYT1YOR065W 930 nt11.48□□□□□ -0.57
SSM4P40318 OLA1YBR025C 1185 nt11.48□□□□□ -0.57
SSM4P40318 THI6YPL214C 1623 nt11.46□□□□□ -0.57
SSM4P40318 YIL168WYIL168W 384 nt11.45□□□□□ -0.58
Retrieved 100 of 7,029 protein–RNA pairs in 15.9 ms