Protein–RNA interactions for Protein: P20448

HCA4, ATP-dependent RNA helicase HCA4, yeastyeast

Known RBP Predictions only

Length 770 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
HCA4P20448 SWI4YER111C 3282 nt1.63□□□□□ -2.15
HCA4P20448 tS(GCU)Q1tS(GCU)Q1 86 nt1.63□□□□□ -2.15
HCA4P20448 snR14snR14 160 nt1.63□□□□□ -2.15
HCA4P20448 CDC25YLR310C 4770 nt1.63□□□□□ -2.15
HCA4P20448 CCH1YGR217W 6120 nt1.63□□□□□ -2.15
HCA4P20448 CHS1YNL192W 3396 nt1.62□□□□□ -2.15
HCA4P20448 MSN5YDR335W 3675 nt1.62□□□□□ -2.15
HCA4P20448 TAH1YCR060W 336 nt1.61□□□□□ -2.15
HCA4P20448 MSH3YCR092C 3057 nt1.61□□□□□ -2.15
HCA4P20448 SPC110YDR356W 2835 nt1.61□□□□□ -2.15
HCA4P20448 EST2YLR318W 2655 nt1.61□□□□□ -2.15
HCA4P20448 tQ(UUG)E2tQ(UUG)E2 72 nt1.6□□□□□ -2.15
HCA4P20448 COX5BYIL111W 456 nt1.6□□□□□ -2.15
HCA4P20448 PET127YOR017W 2403 nt1.6□□□□□ -2.15
HCA4P20448 APL3YBL037W 3078 nt1.58□□□□□ -2.16
HCA4P20448 UTP8YGR128C 2142 nt1.58□□□□□ -2.16
HCA4P20448 YAR009CYAR009C 3591 nt1.58□□□□□ -2.16
HCA4P20448 SET3YKR029C 2256 nt1.57□□□□□ -2.16
HCA4P20448 NUP145YGL092W 3954 nt1.57□□□□□ -2.16
HCA4P20448 snR81snR81 201 nt1.56□□□□□ -2.16
HCA4P20448 ASE1YOR058C 2658 nt1.55□□□□□ -2.16
HCA4P20448 FYV8YGR196C 2454 nt1.55□□□□□ -2.16
HCA4P20448 YDR210WYDR210W 228 nt1.55□□□□□ -2.16
HCA4P20448 YLR041WYLR041W 321 nt1.55□□□□□ -2.16
HCA4P20448 snR45snR45 172 nt1.55□□□□□ -2.16
HCA4P20448 RSM22YKL155C 1887 nt1.54□□□□□ -2.16
HCA4P20448 YLL066W-BYLL066W-B 171 nt1.54□□□□□ -2.16
HCA4P20448 SXM1YDR395W 2835 nt1.54□□□□□ -2.16
HCA4P20448 AZF1YOR113W 2745 nt1.53□□□□□ -2.16
HCA4P20448 SEC3YER008C 4011 nt1.53□□□□□ -2.16
HCA4P20448 LAA1YJL207C 6045 nt1.53□□□□□ -2.17
HCA4P20448 PMD1YER132C 5262 nt1.52□□□□□ -2.17
HCA4P20448 STO1YMR125W 2586 nt1.52□□□□□ -2.17
HCA4P20448 YKL100W-AYKL100W-A 90 nt1.51□□□□□ -2.17
HCA4P20448 KAP120YPL125W 3099 nt1.51□□□□□ -2.17
HCA4P20448 NUP188YML103C 4968 nt1.5□□□□□ -2.17
HCA4P20448 HKR1YDR420W 5409 nt1.5□□□□□ -2.17
HCA4P20448 tH(GUG)E1tH(GUG)E1 72 nt1.5□□□□□ -2.17
HCA4P20448 tH(GUG)E2tH(GUG)E2 72 nt1.5□□□□□ -2.17
HCA4P20448 tH(GUG)G1tH(GUG)G1 72 nt1.5□□□□□ -2.17
HCA4P20448 tH(GUG)G2tH(GUG)G2 72 nt1.5□□□□□ -2.17
HCA4P20448 tH(GUG)HtH(GUG)H 72 nt1.5□□□□□ -2.17
HCA4P20448 tH(GUG)KtH(GUG)K 72 nt1.5□□□□□ -2.17
HCA4P20448 tH(GUG)MtH(GUG)M 72 nt1.5□□□□□ -2.17
HCA4P20448 SEC21YNL287W 2808 nt1.5□□□□□ -2.17
HCA4P20448 YML002WYML002W 2214 nt1.5□□□□□ -2.17
HCA4P20448 FYV10YIL097W 1551 nt1.49□□□□□ -2.17
HCA4P20448 tM(CAU)Q2tM(CAU)Q2 78 nt1.48□□□□□ -2.17
HCA4P20448 NOP9YJL010C 2001 nt1.48□□□□□ -2.17
HCA4P20448 YNL284C-BYNL284C-B 5268 nt1.47□□□□□ -2.17
HCA4P20448 YBR200W-AYBR200W-A 165 nt1.47□□□□□ -2.17
HCA4P20448 CDC39YCR093W 6327 nt1.47□□□□□ -2.17
HCA4P20448 BIR1YJR089W 2865 nt1.46□□□□□ -2.18
HCA4P20448 YGR130CYGR130C 2451 nt1.46□□□□□ -2.18
HCA4P20448 YDL073WYDL073W 2955 nt1.46□□□□□ -2.18
HCA4P20448 snR190snR190 190 nt1.45□□□□□ -2.18
HCA4P20448 SEC1YDR164C 2175 nt1.45□□□□□ -2.18
HCA4P20448 YLR232WYLR232W 348 nt1.44□□□□□ -2.18
HCA4P20448 YBR072C-AYBR072C-A 162 nt1.44□□□□□ -2.18
HCA4P20448 WAR1YML076C 2835 nt1.44□□□□□ -2.18
HCA4P20448 GEA2YEL022W 4380 nt1.43□□□□□ -2.18
HCA4P20448 YJL127W-AYJL127W-A 117 nt1.42□□□□□ -2.18
HCA4P20448 YAL037C-AYAL037C-A 93 nt1.42□□□□□ -2.18
HCA4P20448 YNL266WYNL266W 420 nt1.42□□□□□ -2.18
HCA4P20448 IML1YJR138W 4755 nt1.4□□□□□ -2.18
HCA4P20448 RPL26BYGR034W 384 nt1.4□□□□□ -2.19
HCA4P20448 BUD3YCL014W 4911 nt1.39□□□□□ -2.19
HCA4P20448 YGR146C-AYGR146C-A 162 nt1.39□□□□□ -2.19
HCA4P20448 SMC1YFL008W 3678 nt1.38□□□□□ -2.19
HCA4P20448 RAD9YDR217C 3930 nt1.38□□□□□ -2.19
HCA4P20448 snR62snR62 100 nt1.37□□□□□ -2.19
HCA4P20448 YBL071C-BYBL071C-B 99 nt1.37□□□□□ -2.19
HCA4P20448 HUG1YML058W-A 207 nt1.36□□□□□ -2.19
HCA4P20448 YOL083C-AYOL083C-A 141 nt1.36□□□□□ -2.19
HCA4P20448 PRP16YKR086W 3216 nt1.35□□□□□ -2.19
HCA4P20448 tN(GUU)QtN(GUU)Q 71 nt1.34□□□□□ -2.19
HCA4P20448 NNF2YGR089W 2811 nt1.33□□□□□ -2.2
HCA4P20448 RPS26AYGL189C 360 nt1.31□□□□□ -2.2
HCA4P20448 NST1YNL091W 3723 nt1.3□□□□□ -2.2
HCA4P20448 SIP4YJL089W 2490 nt1.27□□□□□ -2.21
HCA4P20448 YJR029WYJR029W 5268 nt1.26□□□□□ -2.21
HCA4P20448 YPR137C-BYPR137C-B 5268 nt1.26□□□□□ -2.21
HCA4P20448 YPL060C-AYPL060C-A 3315 nt1.25□□□□□ -2.21
HCA4P20448 tV(UAC)BtV(UAC)B 74 nt1.25□□□□□ -2.21
HCA4P20448 tV(UAC)DtV(UAC)D 74 nt1.25□□□□□ -2.21
HCA4P20448 YPR160W-AYPR160W-A 81 nt1.25□□□□□ -2.21
HCA4P20448 UBP3YER151C 2739 nt1.24□□□□□ -2.21
HCA4P20448 SEC8YPR055W 3198 nt1.24□□□□□ -2.21
HCA4P20448 YOL164W-AYOL164W-A 183 nt1.24□□□□□ -2.21
HCA4P20448 RPM2YML091C 3609 nt1.23□□□□□ -2.21
HCA4P20448 YDR034C-AYDR034C-A 177 nt1.23□□□□□ -2.21
HCA4P20448 YBR196C-AYBR196C-A 150 nt1.23□□□□□ -2.21
HCA4P20448 SEC10YLR166C 2616 nt1.23□□□□□ -2.21
HCA4P20448 SPT7YBR081C 3999 nt1.21□□□□□ -2.22
HCA4P20448 ORC3YLL004W 1851 nt1.2□□□□□ -2.22
HCA4P20448 YLR286W-AYLR286W-A 135 nt1.2□□□□□ -2.22
HCA4P20448 YLR399W-AYLR399W-A 105 nt1.2□□□□□ -2.22
HCA4P20448 VAM6YDL077C 3150 nt1.2□□□□□ -2.22
HCA4P20448 YGR240C-AYGR240C-A 201 nt1.17□□□□□ -2.22
HCA4P20448 BEM2YER155C 6504 nt1.16□□□□□ -2.22
Retrieved 100 of 7,029 protein–RNA pairs in 26.7 ms