Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 SMC1YFL008W 3678 nt1.34□□□□□ -2.2
SSM4P40318 VIK1YPL253C 1944 nt1.34□□□□□ -2.2
SSM4P40318 YIL142C-AYIL142C-A 333 nt1.34□□□□□ -2.2
SSM4P40318 KAP120YPL125W 3099 nt1.34□□□□□ -2.2
SSM4P40318 NST1YNL091W 3723 nt1.33□□□□□ -2.2
SSM4P40318 snR65snR65 100 nt1.33□□□□□ -2.2
SSM4P40318 CDC36YDL165W 576 nt1.33□□□□□ -2.2
SSM4P40318 YBR064WYBR064W 429 nt1.33□□□□□ -2.2
SSM4P40318 UTP20YBL004W 7482 nt1.32□□□□□ -2.2
SSM4P40318 RPS27BYHR021C 249 nt1.31□□□□□ -2.2
SSM4P40318 YOR011W-AYOR011W-A 207 nt1.31□□□□□ -2.2
SSM4P40318 WAR1YML076C 2835 nt1.31□□□□□ -2.2
SSM4P40318 RAD9YDR217C 3930 nt1.3□□□□□ -2.2
SSM4P40318 GEA2YEL022W 4380 nt1.3□□□□□ -2.2
SSM4P40318 CSE2YNR010W 450 nt1.29□□□□□ -2.2
SSM4P40318 PAM16YJL104W 450 nt1.28□□□□□ -2.2
SSM4P40318 YNL028WYNL028W 318 nt1.28□□□□□ -2.2
SSM4P40318 YNL277W-AYNL277W-A 189 nt1.28□□□□□ -2.2
SSM4P40318 VAM6YDL077C 3150 nt1.28□□□□□ -2.21
SSM4P40318 YOR218CYOR218C 420 nt1.27□□□□□ -2.21
SSM4P40318 YPR010C-AYPR010C-A 219 nt1.26□□□□□ -2.21
SSM4P40318 RAD61YDR014W 1944 nt1.26□□□□□ -2.21
SSM4P40318 BUD3YCL014W 4911 nt1.25□□□□□ -2.21
SSM4P40318 YOR008C-AYOR008C-A 225 nt1.24□□□□□ -2.21
SSM4P40318 IES4YOR189W 351 nt1.24□□□□□ -2.21
SSM4P40318 YOR231C-AYOR231C-A 201 nt1.24□□□□□ -2.21
SSM4P40318 OLI1Q0130 231 nt1.23□□□□□ -2.21
SSM4P40318 PRP16YKR086W 3216 nt1.22□□□□□ -2.21
SSM4P40318 YLR120W-AYLR120W-A 102 nt1.22□□□□□ -2.21
SSM4P40318 ECM12YHR021W-A 456 nt1.21□□□□□ -2.22
SSM4P40318 YOR015WYOR015W 360 nt1.21□□□□□ -2.22
SSM4P40318 YGR069WYGR069W 336 nt1.2□□□□□ -2.22
SSM4P40318 MCM10YIL150C 1716 nt1.19□□□□□ -2.22
SSM4P40318 NOP9YJL010C 2001 nt1.19□□□□□ -2.22
SSM4P40318 YEL020C-BYEL020C-B 198 nt1.19□□□□□ -2.22
SSM4P40318 ISD11YER048W-A 285 nt1.19□□□□□ -2.22
SSM4P40318 YDL073WYDL073W 2955 nt1.18□□□□□ -2.22
SSM4P40318 YMR172C-AYMR172C-A 384 nt1.18□□□□□ -2.22
SSM4P40318 CMC4YMR194C-B 222 nt1.18□□□□□ -2.22
SSM4P40318 YDL196WYDL196W 330 nt1.17□□□□□ -2.22
SSM4P40318 SGF11YPL047W 300 nt1.17□□□□□ -2.22
SSM4P40318 ASE1YOR058C 2658 nt1.16□□□□□ -2.22
SSM4P40318 PAA1YDR071C 576 nt1.15□□□□□ -2.22
SSM4P40318 YJL197C-AYJL197C-A 282 nt1.15□□□□□ -2.22
SSM4P40318 YNL211CYNL211C 261 nt1.15□□□□□ -2.22
SSM4P40318 YPL044CYPL044C 549 nt1.15□□□□□ -2.22
SSM4P40318 YER181CYER181C 324 nt1.15□□□□□ -2.23
SSM4P40318 YGL052WYGL052W 306 nt1.15□□□□□ -2.23
SSM4P40318 YOR282WYOR282W 321 nt1.15□□□□□ -2.23
SSM4P40318 YJL026C-AYJL026C-A 222 nt1.14□□□□□ -2.23
SSM4P40318 YDR354C-AYDR354C-A 144 nt1.13□□□□□ -2.23
SSM4P40318 YAL067W-AYAL067W-A 228 nt1.12□□□□□ -2.23
SSM4P40318 YPL152W-AYPL152W-A 99 nt1.12□□□□□ -2.23
SSM4P40318 YOR192C-BYOR192C-B 5313 nt1.11□□□□□ -2.23
SSM4P40318 tT(AGU)BtT(AGU)B 73 nt1.11□□□□□ -2.23
SSM4P40318 tT(AGU)CtT(AGU)C 73 nt1.11□□□□□ -2.23
SSM4P40318 tT(AGU)DtT(AGU)D 73 nt1.11□□□□□ -2.23
SSM4P40318 tT(AGU)HtT(AGU)H 73 nt1.11□□□□□ -2.23
SSM4P40318 tT(AGU)I1tT(AGU)I1 73 nt1.11□□□□□ -2.23
SSM4P40318 tT(AGU)I2tT(AGU)I2 73 nt1.11□□□□□ -2.23
SSM4P40318 tT(AGU)JtT(AGU)J 73 nt1.11□□□□□ -2.23
SSM4P40318 tT(AGU)N1tT(AGU)N1 73 nt1.11□□□□□ -2.23
SSM4P40318 tT(AGU)N2tT(AGU)N2 73 nt1.11□□□□□ -2.23
SSM4P40318 tT(AGU)O1tT(AGU)O1 73 nt1.11□□□□□ -2.23
SSM4P40318 tT(AGU)O2tT(AGU)O2 73 nt1.11□□□□□ -2.23
SSM4P40318 YPR092WYPR092W 306 nt1.11□□□□□ -2.23
SSM4P40318 PMP1YCR024C-A 123 nt1.1□□□□□ -2.23
SSM4P40318 APL1YJR005W 2103 nt1.1□□□□□ -2.23
SSM4P40318 YOL014WYOL014W 375 nt1.1□□□□□ -2.23
SSM4P40318 LTE1YAL024C 4308 nt1.09□□□□□ -2.24
SSM4P40318 RPL26BYGR034W 384 nt1.08□□□□□ -2.24
SSM4P40318 BFR2YDR299W 1605 nt1.07□□□□□ -2.24
SSM4P40318 YMR160WYMR160W 2451 nt1.07□□□□□ -2.24
SSM4P40318 YFR012W-AYFR012W-A 87 nt1.07□□□□□ -2.24
SSM4P40318 EMT1tM(CAU)D 73 nt1.07□□□□□ -2.24
SSM4P40318 EMT5tM(CAU)J1 73 nt1.07□□□□□ -2.24
SSM4P40318 EMT3tM(CAU)J2 73 nt1.07□□□□□ -2.24
SSM4P40318 EMT4tM(CAU)M 73 nt1.07□□□□□ -2.24
SSM4P40318 EMT2tM(CAU)O2 73 nt1.07□□□□□ -2.24
SSM4P40318 YOR072W-BYOR072W-B 162 nt1.06□□□□□ -2.24
SSM4P40318 snR74snR74 88 nt1.05□□□□□ -2.24
SSM4P40318 YLL019W-AYLL019W-A 93 nt1.05□□□□□ -2.24
SSM4P40318 YDL185C-AYDL185C-A 228 nt1.03□□□□□ -2.24
SSM4P40318 YML099W-AYML099W-A 330 nt1.03□□□□□ -2.24
SSM4P40318 YMR307C-AYMR307C-A 195 nt1.03□□□□□ -2.24
SSM4P40318 snR49snR49 165 nt1.03□□□□□ -2.24
SSM4P40318 tF(GAA)QtF(GAA)Q 75 nt1.01□□□□□ -2.25
SSM4P40318 SEC8YPR055W 3198 nt1.01□□□□□ -2.25
SSM4P40318 YHR063W-AYHR063W-A 336 nt1□□□□□ -2.25
SSM4P40318 HAL9YOL089C 3093 nt1□□□□□ -2.25
SSM4P40318 YJR029WYJR029W 5268 nt0.99□□□□□ -2.25
SSM4P40318 YPR137C-BYPR137C-B 5268 nt0.99□□□□□ -2.25
SSM4P40318 YIR030W-AYIR030W-A 384 nt0.99□□□□□ -2.25
SSM4P40318 SEC1YDR164C 2175 nt0.99□□□□□ -2.25
SSM4P40318 YCR018C-AYCR018C-A 255 nt0.98□□□□□ -2.25
SSM4P40318 BIR1YJR089W 2865 nt0.97□□□□□ -2.25
SSM4P40318 snR190snR190 190 nt0.97□□□□□ -2.25
SSM4P40318 YPR160W-AYPR160W-A 81 nt0.97□□□□□ -2.25
SSM4P40318 snR55snR55 98 nt0.96□□□□□ -2.26
SSM4P40318 YLR399W-AYLR399W-A 105 nt0.95□□□□□ -2.26
Retrieved 100 of 7,029 protein–RNA pairs in 35.6 ms