Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 USO1YDL058W 5373 nt2.1□□□□□ -2.07
SSL2Q00578 NUP170YBL079W 4509 nt2.1□□□□□ -2.07
SSL2Q00578 NOC3YLR002C 1992 nt2.09□□□□□ -2.07
SSL2Q00578 COY1YKL179C 2040 nt2.09□□□□□ -2.07
SSL2Q00578 RPL31AYDL075W 342 nt2.09□□□□□ -2.07
SSL2Q00578 YEL073CYEL073C 324 nt2.09□□□□□ -2.07
SSL2Q00578 YER172C-AYER172C-A 381 nt2.09□□□□□ -2.07
SSL2Q00578 YIR044CYIR044C 186 nt2.09□□□□□ -2.07
SSL2Q00578 YMR242W-AYMR242W-A 90 nt2.09□□□□□ -2.07
SSL2Q00578 MGA2YIR033W 3342 nt2.08□□□□□ -2.08
SSL2Q00578 YLL019W-AYLL019W-A 93 nt2.08□□□□□ -2.08
SSL2Q00578 YDL196WYDL196W 330 nt2.07□□□□□ -2.08
SSL2Q00578 ZIP2YGL249W 2115 nt2.07□□□□□ -2.08
SSL2Q00578 MYO4YAL029C 4416 nt2.07□□□□□ -2.08
SSL2Q00578 UBP1YDL122W 2430 nt2.07□□□□□ -2.08
SSL2Q00578 HSL1YKL101W 4557 nt2.06□□□□□ -2.08
SSL2Q00578 TFC8YPL007C 1767 nt2.06□□□□□ -2.08
SSL2Q00578 BUD2YKL092C 3315 nt2.06□□□□□ -2.08
SSL2Q00578 CHC1YGL206C 4962 nt2.05□□□□□ -2.08
SSL2Q00578 TOR2YKL203C 7425 nt2.05□□□□□ -2.08
SSL2Q00578 YOR343W-BYOR343W-B 5313 nt2.05□□□□□ -2.08
SSL2Q00578 FKS1YLR342W 5631 nt2.05□□□□□ -2.08
SSL2Q00578 GCN2YDR283C 4980 nt2.05□□□□□ -2.08
SSL2Q00578 MAD1YGL086W 2250 nt2.05□□□□□ -2.08
SSL2Q00578 ZIP1YDR285W 2628 nt2.04□□□□□ -2.08
SSL2Q00578 ATG9YDL149W 2994 nt2.04□□□□□ -2.08
SSL2Q00578 YHR210CYHR210C 1026 nt2.04□□□□□ -2.08
SSL2Q00578 RTP1YMR185W 2946 nt2.04□□□□□ -2.08
SSL2Q00578 YMR272W-BYMR272W-B 108 nt2.04□□□□□ -2.08
SSL2Q00578 AHC1YOR023C 1701 nt2.04□□□□□ -2.08
SSL2Q00578 HAL9YOL089C 3093 nt2.04□□□□□ -2.08
SSL2Q00578 GYP5YPL249C 2685 nt2.04□□□□□ -2.08
SSL2Q00578 APL2YKL135C 2181 nt2.03□□□□□ -2.08
SSL2Q00578 PDR8YLR266C 2106 nt2.03□□□□□ -2.08
SSL2Q00578 YCR087C-AYCR087C-A 462 nt2.03□□□□□ -2.08
SSL2Q00578 SAS3YBL052C 2496 nt2.02□□□□□ -2.09
SSL2Q00578 IRE1YHR079C 3348 nt2.02□□□□□ -2.09
SSL2Q00578 FIG4YNL325C 2640 nt2.02□□□□□ -2.09
SSL2Q00578 YOR108C-AYOR108C-A 210 nt2.02□□□□□ -2.09
SSL2Q00578 NCA2YPR155C 1851 nt2.02□□□□□ -2.09
SSL2Q00578 SNU13YEL026W 381 nt2.01□□□□□ -2.09
SSL2Q00578 MSH5YDL154W 2706 nt2.01□□□□□ -2.09
SSL2Q00578 AGC1YPR021C 2709 nt2□□□□□ -2.09
SSL2Q00578 YLL007CYLL007C 1998 nt2□□□□□ -2.09
SSL2Q00578 TMA7YLR262C-A 195 nt2□□□□□ -2.09
SSL2Q00578 AIM44YPL158C 2277 nt1.98□□□□□ -2.09
SSL2Q00578 SEC63YOR254C 1992 nt1.98□□□□□ -2.09
SSL2Q00578 DGR2YKL121W 2559 nt1.98□□□□□ -2.09
SSL2Q00578 YIL134C-AYIL134C-A 204 nt1.98□□□□□ -2.09
SSL2Q00578 DCP2YNL118C 2913 nt1.98□□□□□ -2.09
SSL2Q00578 SEY1YOR165W 2331 nt1.97□□□□□ -2.09
SSL2Q00578 PIP2YOR363C 2991 nt1.97□□□□□ -2.09
SSL2Q00578 MAK10YEL053C 2202 nt1.97□□□□□ -2.09
SSL2Q00578 PIG1YLR273C 1947 nt1.96□□□□□ -2.1
SSL2Q00578 MLH3YPL164C 2148 nt1.96□□□□□ -2.1
SSL2Q00578 FRK1YPL141C 2598 nt1.96□□□□□ -2.1
SSL2Q00578 IFH1YLR223C 3258 nt1.95□□□□□ -2.1
SSL2Q00578 YDR521WYDR521W 336 nt1.95□□□□□ -2.1
SSL2Q00578 YBR178WYBR178W 375 nt1.95□□□□□ -2.1
SSL2Q00578 MSH6YDR097C 3729 nt1.94□□□□□ -2.1
SSL2Q00578 UBR2YLR024C 5619 nt1.94□□□□□ -2.1
SSL2Q00578 YOR329W-AYOR329W-A 210 nt1.94□□□□□ -2.1
SSL2Q00578 YPL044CYPL044C 549 nt1.94□□□□□ -2.1
SSL2Q00578 YBR206WYBR206W 324 nt1.94□□□□□ -2.1
SSL2Q00578 YHR214C-BYHR214C-B 5382 nt1.94□□□□□ -2.1
SSL2Q00578 PTP2YOR208W 2253 nt1.93□□□□□ -2.1
SSL2Q00578 ALK1YGL021W 2283 nt1.93□□□□□ -2.1
SSL2Q00578 YGR109W-BYGR109W-B 4644 nt1.92□□□□□ -2.1
SSL2Q00578 CTR9YOL145C 3234 nt1.92□□□□□ -2.1
SSL2Q00578 HIR3YJR140C 4947 nt1.92□□□□□ -2.1
SSL2Q00578 SLD3YGL113W 2007 nt1.92□□□□□ -2.1
SSL2Q00578 YDR354C-AYDR354C-A 144 nt1.92□□□□□ -2.1
SSL2Q00578 YBR221W-AYBR221W-A 105 nt1.92□□□□□ -2.1
SSL2Q00578 HMI1YOL095C 2121 nt1.91□□□□□ -2.1
SSL2Q00578 FAB1YFR019W 6837 nt1.9□□□□□ -2.1
SSL2Q00578 YLR419WYLR419W 4308 nt1.9□□□□□ -2.11
SSL2Q00578 MDS3YGL197W 4464 nt1.9□□□□□ -2.11
SSL2Q00578 RPS30BYOR182C 192 nt1.9□□□□□ -2.11
SSL2Q00578 YDR524C-AYDR524C-A 120 nt1.89□□□□□ -2.11
SSL2Q00578 YJL026C-AYJL026C-A 222 nt1.89□□□□□ -2.11
SSL2Q00578 YMR175W-AYMR175W-A 195 nt1.89□□□□□ -2.11
SSL2Q00578 YOR102WYOR102W 351 nt1.89□□□□□ -2.11
SSL2Q00578 YCL001W-BYCL001W-B 255 nt1.89□□□□□ -2.11
SSL2Q00578 YHL015W-AYHL015W-A 84 nt1.88□□□□□ -2.11
SSL2Q00578 YBL109WYBL109W 336 nt1.88□□□□□ -2.11
SSL2Q00578 YJR039WYJR039W 3366 nt1.87□□□□□ -2.11
SSL2Q00578 COX12YLR038C 252 nt1.87□□□□□ -2.11
SSL2Q00578 YNL144CYNL144C 2223 nt1.87□□□□□ -2.11
SSL2Q00578 PBY1YBR094W 2262 nt1.87□□□□□ -2.11
SSL2Q00578 tT(UGU)HtT(UGU)H 72 nt1.86□□□□□ -2.11
SSL2Q00578 YJL022WYJL022W 309 nt1.86□□□□□ -2.11
SSL2Q00578 YMR247W-AYMR247W-A 144 nt1.86□□□□□ -2.11
SSL2Q00578 COG4YPR105C 2586 nt1.86□□□□□ -2.11
SSL2Q00578 PEP1YBL017C 4740 nt1.86□□□□□ -2.11
SSL2Q00578 BPH1YCR032W 6504 nt1.86□□□□□ -2.11
SSL2Q00578 LHS1YKL073W 2646 nt1.86□□□□□ -2.11
SSL2Q00578 YCR038W-AYCR038W-A 126 nt1.85□□□□□ -2.11
SSL2Q00578 YER053C-AYER053C-A 114 nt1.85□□□□□ -2.11
SSL2Q00578 CDC31YOR257W 486 nt1.85□□□□□ -2.11
SSL2Q00578 FIG2YCR089W 4830 nt1.85□□□□□ -2.11
Retrieved 100 of 7,029 protein–RNA pairs in 107.3 ms