Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 NUM1YDR150W 8247 nt2.69□□□□□ -1.98
UBP3Q01477 SLM1YIL105C 2061 nt2.69□□□□□ -1.98
UBP3Q01477 RFX1YLR176C 2436 nt2.68□□□□□ -1.98
UBP3Q01477 snR72snR72 98 nt2.68□□□□□ -1.98
UBP3Q01477 NEW1YPL226W 3591 nt2.67□□□□□ -1.98
UBP3Q01477 VTC3YPL019C 2508 nt2.67□□□□□ -1.98
UBP3Q01477 YBR174CYBR174C 315 nt2.67□□□□□ -1.98
UBP3Q01477 COS111YBR203W 2775 nt2.66□□□□□ -1.98
UBP3Q01477 INO80YGL150C 4470 nt2.66□□□□□ -1.98
UBP3Q01477 TRL1YJL087C 2484 nt2.66□□□□□ -1.98 RIP-Chip
UBP3Q01477 ARP8YOR141C 2646 nt2.66□□□□□ -1.98
UBP3Q01477 SMC6YLR383W 3345 nt2.66□□□□□ -1.98
UBP3Q01477 YBL005W-BYBL005W-B 5268 nt2.66□□□□□ -1.98
UBP3Q01477 MCM10YIL150C 1716 nt2.66□□□□□ -1.98
UBP3Q01477 SSD1YDR293C 3753 nt2.66□□□□□ -1.98
UBP3Q01477 PUT3YKL015W 2940 nt2.65□□□□□ -1.99 RIP-Chip
UBP3Q01477 YCR043CYCR043C 384 nt2.65□□□□□ -1.99
UBP3Q01477 YIL156W-BYIL156W-B 222 nt2.65□□□□□ -1.99
UBP3Q01477 YOR329W-AYOR329W-A 210 nt2.65□□□□□ -1.99
UBP3Q01477 HAL9YOL089C 3093 nt2.65□□□□□ -1.99 RIP-Chip
UBP3Q01477 SWI6YLR182W 2412 nt2.64□□□□□ -1.99 RIP-Chip
UBP3Q01477 SPO21YOL091W 1830 nt2.64□□□□□ -1.99 RIP-Chip
UBP3Q01477 VMR1YHL035C 4779 nt2.64□□□□□ -1.99
UBP3Q01477 IST2YBR086C 2841 nt2.64□□□□□ -1.99
UBP3Q01477 YDR182W-AYDR182W-A 204 nt2.64□□□□□ -1.99
UBP3Q01477 RPB10YOR210W 213 nt2.64□□□□□ -1.99
UBP3Q01477 YOR345CYOR345C 351 nt2.64□□□□□ -1.99
UBP3Q01477 YOR394C-AYOR394C-A 168 nt2.64□□□□□ -1.99
UBP3Q01477 RTT101YJL047C 2529 nt2.64□□□□□ -1.99 RIP-Chip
UBP3Q01477 RPL42BYHR141C 321 nt2.63□□□□□ -1.99 RIP-Chip
UBP3Q01477 YJL120WYJL120W 324 nt2.63□□□□□ -1.99
UBP3Q01477 RPL42AYNL162W 321 nt2.63□□□□□ -1.99 RIP-Chip
UBP3Q01477 STE11YLR362W 2154 nt2.63□□□□□ -1.99 RIP-Chip
UBP3Q01477 COY1YKL179C 2040 nt2.63□□□□□ -1.99
UBP3Q01477 RAV1YJR033C 4074 nt2.63□□□□□ -1.99 RIP-Chip
UBP3Q01477 CDC60YPL160W 3273 nt2.62□□□□□ -1.99
UBP3Q01477 YCR102W-AYCR102W-A 198 nt2.62□□□□□ -1.99
UBP3Q01477 YIR044CYIR044C 186 nt2.62□□□□□ -1.99
UBP3Q01477 YBL012CYBL012C 402 nt2.61□□□□□ -1.99
UBP3Q01477 LYS14YDR034C 2373 nt2.61□□□□□ -1.99
UBP3Q01477 PHO91YNR013C 2685 nt2.6□□□□□ -1.99
UBP3Q01477 SLY1YDR189W 2001 nt2.6□□□□□ -1.99
UBP3Q01477 YHR071C-AYHR071C-A 321 nt2.6□□□□□ -1.99
UBP3Q01477 TDA9YML081W 3756 nt2.6□□□□□ -1.99
UBP3Q01477 CSF1YLR087C 8877 nt2.59□□□□□ -1.99
UBP3Q01477 YDR341CYDR341C 1824 nt2.59□□□□□ -1.99
UBP3Q01477 MSB1YOR188W 3414 nt2.59□□□□□ -1.99
UBP3Q01477 YOR072W-BYOR072W-B 162 nt2.59□□□□□ -1.99
UBP3Q01477 GIP3YPL137C 3831 nt2.59□□□□□ -2
UBP3Q01477 BRP1YGL007W 378 nt2.58□□□□□ -2
UBP3Q01477 YHR073W-AYHR073W-A 177 nt2.58□□□□□ -2
UBP3Q01477 YIL071W-AYIL071W-A 477 nt2.58□□□□□ -2
UBP3Q01477 YKR075W-AYKR075W-A 270 nt2.58□□□□□ -2
UBP3Q01477 KTI11YBL071W-A 249 nt2.58□□□□□ -2
UBP3Q01477 SYH1YPL105C 2550 nt2.57□□□□□ -2
UBP3Q01477 TFC8YPL007C 1767 nt2.57□□□□□ -2
UBP3Q01477 SCP160YJL080C 3669 nt2.57□□□□□ -2 RIP-Chip
UBP3Q01477 PAU18YLL064C 363 nt2.57□□□□□ -2
UBP3Q01477 RPS25BYLR333C 327 nt2.57□□□□□ -2 RIP-Chip
UBP3Q01477 PAU6YNR076W 363 nt2.57□□□□□ -2
UBP3Q01477 SWI5YDR146C 2130 nt2.57□□□□□ -2 RIP-Chip
UBP3Q01477 YFR016CYFR016C 3702 nt2.56□□□□□ -2
UBP3Q01477 MLH1YMR167W 2310 nt2.56□□□□□ -2
UBP3Q01477 SRP14YDL092W 441 nt2.56□□□□□ -2 RIP-Chip
UBP3Q01477 APL5YPL195W 2799 nt2.56□□□□□ -2 RIP-Chip
UBP3Q01477 PDR11YIL013C 4236 nt2.55□□□□□ -2
UBP3Q01477 YDL196WYDL196W 330 nt2.55□□□□□ -2
UBP3Q01477 RPL37BYDR500C 267 nt2.55□□□□□ -2
UBP3Q01477 YDR544CYDR544C 429 nt2.55□□□□□ -2
UBP3Q01477 EMP24YGL200C 612 nt2.55□□□□□ -2 RIP-Chip
UBP3Q01477 YKL165C-AYKL165C-A 234 nt2.55□□□□□ -2
UBP3Q01477 NAM7YMR080C 2916 nt2.55□□□□□ -2
UBP3Q01477 UBP1YDL122W 2430 nt2.54□□□□□ -2
UBP3Q01477 YBR221W-AYBR221W-A 105 nt2.54□□□□□ -2
UBP3Q01477 MSC6YOR354C 2079 nt2.54□□□□□ -2
UBP3Q01477 SPF1YEL031W 3648 nt2.54□□□□□ -2
UBP3Q01477 NUP170YBL079W 4509 nt2.53□□□□□ -2
UBP3Q01477 ENV11YGR071C 2583 nt2.53□□□□□ -2
UBP3Q01477 PIG1YLR273C 1947 nt2.53□□□□□ -2
UBP3Q01477 NCA2YPR155C 1851 nt2.53□□□□□ -2
UBP3Q01477 PET309YLR067C 2898 nt2.53□□□□□ -2 RIP-Chip
UBP3Q01477 BUD2YKL092C 3315 nt2.53□□□□□ -2
UBP3Q01477 YEF3YLR249W 3135 nt2.52□□□□□ -2.01
UBP3Q01477 PAU3YCR104W 375 nt2.52□□□□□ -2.01 RIP-Chip
UBP3Q01477 SVL3YPL032C 2478 nt2.52□□□□□ -2.01 RIP-Chip
UBP3Q01477 ELG1YOR144C 2376 nt2.52□□□□□ -2.01
UBP3Q01477 SAP185YJL098W 3177 nt2.51□□□□□ -2.01 RIP-Chip
UBP3Q01477 YCR087C-AYCR087C-A 462 nt2.51□□□□□ -2.01
UBP3Q01477 YCL001W-BYCL001W-B 255 nt2.51□□□□□ -2.01
UBP3Q01477 YLL019W-AYLL019W-A 93 nt2.5□□□□□ -2.01
UBP3Q01477 RAD34YDR314C 2079 nt2.49□□□□□ -2.01
UBP3Q01477 HSH155YMR288W 2916 nt2.49□□□□□ -2.01
UBP3Q01477 CAT2YML042W 2013 nt2.49□□□□□ -2.01
UBP3Q01477 RLM1YPL089C 2031 nt2.49□□□□□ -2.01 RIP-Chip
UBP3Q01477 NOC3YLR002C 1992 nt2.49□□□□□ -2.01
UBP3Q01477 YJL022WYJL022W 309 nt2.48□□□□□ -2.01
UBP3Q01477 ATP7YKL016C 525 nt2.48□□□□□ -2.01
UBP3Q01477 YMR326CYMR326C 309 nt2.48□□□□□ -2.01
UBP3Q01477 YCL046WYCL046W 324 nt2.48□□□□□ -2.01
UBP3Q01477 YOL098CYOL098C 3114 nt2.48□□□□□ -2.01
Retrieved 100 of 7,029 protein–RNA pairs in 61.2 ms