Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 HNT1YDL125C 477 nt0.68□□□□□ -2.3
CUP9P41817 YER023C-AYER023C-A 213 nt0.68□□□□□ -2.3
CUP9P41817 YER188C-AYER188C-A 300 nt0.68□□□□□ -2.3
CUP9P41817 YGR045CYGR045C 363 nt0.68□□□□□ -2.3
CUP9P41817 YJR079WYJR079W 330 nt0.68□□□□□ -2.3
CUP9P41817 ECM9YKR004C 1134 nt0.68□□□□□ -2.3
CUP9P41817 CMC4YMR194C-B 222 nt0.68□□□□□ -2.3
CUP9P41817 NOC3YLR002C 1992 nt0.68□□□□□ -2.3
CUP9P41817 PAN3YKL025C 2040 nt0.67□□□□□ -2.3
CUP9P41817 NHP2YDL208W 471 nt0.67□□□□□ -2.3
CUP9P41817 YDR008CYDR008C 351 nt0.67□□□□□ -2.3
CUP9P41817 YLR198CYLR198C 360 nt0.67□□□□□ -2.3
CUP9P41817 YBR012CYBR012C 420 nt0.67□□□□□ -2.3
CUP9P41817 NUT2YPR168W 474 nt0.67□□□□□ -2.3
CUP9P41817 MPT5YGL178W 2580 nt0.66□□□□□ -2.3
CUP9P41817 SEC1YDR164C 2175 nt0.66□□□□□ -2.3
CUP9P41817 YDL073WYDL073W 2955 nt0.66□□□□□ -2.3
CUP9P41817 YDL187CYDL187C 330 nt0.66□□□□□ -2.3
CUP9P41817 YBR221W-AYBR221W-A 105 nt0.66□□□□□ -2.3
CUP9P41817 AIM9YER080W 1884 nt0.66□□□□□ -2.3
CUP9P41817 NUP157YER105C 4176 nt0.66□□□□□ -2.3
CUP9P41817 MKT1YNL085W 2493 nt0.65□□□□□ -2.3
CUP9P41817 TOF2YKR010C 2316 nt0.65□□□□□ -2.3
CUP9P41817 SET3YKR029C 2256 nt0.65□□□□□ -2.31
CUP9P41817 YDR521WYDR521W 336 nt0.65□□□□□ -2.31
CUP9P41817 CYC7YEL039C 342 nt0.65□□□□□ -2.31
CUP9P41817 RPL16AYIL133C 600 nt0.65□□□□□ -2.31
CUP9P41817 YJR087WYJR087W 351 nt0.65□□□□□ -2.31
CUP9P41817 RUF22RUF22 515 nt0.65□□□□□ -2.31
CUP9P41817 SPO23YBR250W 1572 nt0.65□□□□□ -2.31
CUP9P41817 snR84snR84 550 nt0.64□□□□□ -2.31
CUP9P41817 tT(AGU)BtT(AGU)B 73 nt0.64□□□□□ -2.31
CUP9P41817 tT(AGU)CtT(AGU)C 73 nt0.64□□□□□ -2.31
CUP9P41817 tT(AGU)DtT(AGU)D 73 nt0.64□□□□□ -2.31
CUP9P41817 tT(AGU)HtT(AGU)H 73 nt0.64□□□□□ -2.31
CUP9P41817 tT(AGU)I1tT(AGU)I1 73 nt0.64□□□□□ -2.31
CUP9P41817 tT(AGU)I2tT(AGU)I2 73 nt0.64□□□□□ -2.31
CUP9P41817 tT(AGU)JtT(AGU)J 73 nt0.64□□□□□ -2.31
CUP9P41817 tT(AGU)N1tT(AGU)N1 73 nt0.64□□□□□ -2.31
CUP9P41817 tT(AGU)N2tT(AGU)N2 73 nt0.64□□□□□ -2.31
CUP9P41817 tT(AGU)O1tT(AGU)O1 73 nt0.64□□□□□ -2.31
CUP9P41817 tT(AGU)O2tT(AGU)O2 73 nt0.64□□□□□ -2.31
CUP9P41817 ISF1YMR081C 1017 nt0.64□□□□□ -2.31
CUP9P41817 YOL014WYOL014W 375 nt0.64□□□□□ -2.31
CUP9P41817 YBR032WYBR032W 303 nt0.64□□□□□ -2.31
CUP9P41817 SLM6YBR266C 453 nt0.64□□□□□ -2.31
CUP9P41817 AIM44YPL158C 2277 nt0.63□□□□□ -2.31
CUP9P41817 SPO13YHR014W 876 nt0.63□□□□□ -2.31
CUP9P41817 URM1YIL008W 300 nt0.63□□□□□ -2.31
CUP9P41817 YKL145W-AYKL145W-A 93 nt0.63□□□□□ -2.31
CUP9P41817 YLR252WYLR252W 306 nt0.63□□□□□ -2.31
CUP9P41817 GMC2YLR445W 567 nt0.63□□□□□ -2.31
CUP9P41817 DCP1YOL149W 696 nt0.63□□□□□ -2.31
CUP9P41817 GRX5YPL059W 453 nt0.63□□□□□ -2.31
CUP9P41817 PRP16YKR086W 3216 nt0.63□□□□□ -2.31
CUP9P41817 AFR1YDR085C 1863 nt0.63□□□□□ -2.31
CUP9P41817 LYS14YDR034C 2373 nt0.62□□□□□ -2.31
CUP9P41817 YER175W-AYER175W-A 165 nt0.62□□□□□ -2.31
CUP9P41817 YBR071WYBR071W 636 nt0.62□□□□□ -2.31
CUP9P41817 RIM20YOR275C 1986 nt0.61□□□□□ -2.31
CUP9P41817 AI5_ALPHAQ0070 1893 nt0.61□□□□□ -2.31
CUP9P41817 YDR114CYDR114C 303 nt0.61□□□□□ -2.31
CUP9P41817 YER087C-AYER087C-A 552 nt0.61□□□□□ -2.31
CUP9P41817 NBL1YHR199C-A 222 nt0.61□□□□□ -2.31
CUP9P41817 YLR285C-AYLR285C-A 171 nt0.61□□□□□ -2.31
CUP9P41817 YOR199WYOR199W 330 nt0.61□□□□□ -2.31
CUP9P41817 YOR248WYOR248W 303 nt0.61□□□□□ -2.31
CUP9P41817 YBR200W-AYBR200W-A 165 nt0.61□□□□□ -2.31
CUP9P41817 ENV11YGR071C 2583 nt0.61□□□□□ -2.31
CUP9P41817 YDR182W-AYDR182W-A 204 nt0.6□□□□□ -2.31
CUP9P41817 SPO11YHL022C 1197 nt0.6□□□□□ -2.31
CUP9P41817 YJL047C-AYJL047C-A 135 nt0.6□□□□□ -2.31
CUP9P41817 AFB1YLR040C 675 nt0.6□□□□□ -2.31
CUP9P41817 YNL050CYNL050C 813 nt0.6□□□□□ -2.31
CUP9P41817 YOL029CYOL029C 606 nt0.6□□□□□ -2.31
CUP9P41817 ALY2YJL084C 3141 nt0.6□□□□□ -2.31
CUP9P41817 SLD3YGL113W 2007 nt0.6□□□□□ -2.31
CUP9P41817 SCW11YGL028C 1629 nt0.6□□□□□ -2.31
CUP9P41817 STO1YMR125W 2586 nt0.59□□□□□ -2.31
CUP9P41817 PPN1YDR452W 2025 nt0.59□□□□□ -2.31
CUP9P41817 WIP1YDR374W-A 270 nt0.59□□□□□ -2.31
CUP9P41817 YAP3YHL009C 993 nt0.59□□□□□ -2.31
CUP9P41817 YIR018C-AYIR018C-A 138 nt0.59□□□□□ -2.31
CUP9P41817 SDH2YLL041C 801 nt0.59□□□□□ -2.31
CUP9P41817 YMR153C-AYMR153C-A 336 nt0.59□□□□□ -2.31
CUP9P41817 YDL206WYDL206W 2289 nt0.59□□□□□ -2.32
CUP9P41817 PXA2YKL188C 2562 nt0.58□□□□□ -2.32
CUP9P41817 FIG4YNL325C 2640 nt0.58□□□□□ -2.32
CUP9P41817 YDL196WYDL196W 330 nt0.58□□□□□ -2.32
CUP9P41817 MXR1YER042W 555 nt0.58□□□□□ -2.32
CUP9P41817 YMR031W-AYMR031W-A 327 nt0.57□□□□□ -2.32
CUP9P41817 YMR272W-AYMR272W-A 114 nt0.57□□□□□ -2.32
CUP9P41817 YPR159C-AYPR159C-A 102 nt0.57□□□□□ -2.32
CUP9P41817 PDE2YOR360C 1581 nt0.57□□□□□ -2.32
CUP9P41817 OCA6YDR067C 675 nt0.56□□□□□ -2.32
CUP9P41817 SWF1YDR126W 1011 nt0.56□□□□□ -2.32
CUP9P41817 RKR1YMR247C 4689 nt0.56□□□□□ -2.32
CUP9P41817 SLY1YDR189W 2001 nt0.55□□□□□ -2.32
CUP9P41817 YIL029CYIL029C 429 nt0.55□□□□□ -2.32
CUP9P41817 PRP21YJL203W 843 nt0.55□□□□□ -2.32
Retrieved 100 of 7,029 protein–RNA pairs in 62.7 ms