Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 RPL32YBL092W 393 nt1.94□□□□□ -2.1
SHP1P34223 PCF11YDR228C 1881 nt1.94□□□□□ -2.1
SHP1P34223 ELG1YOR144C 2376 nt1.94□□□□□ -2.1
SHP1P34223 TOF2YKR010C 2316 nt1.94□□□□□ -2.1
SHP1P34223 SNF5YBR289W 2718 nt1.93□□□□□ -2.1
SHP1P34223 FKS1YLR342W 5631 nt1.93□□□□□ -2.1
SHP1P34223 TIM13YGR181W 318 nt1.93□□□□□ -2.1
SHP1P34223 YHR073W-AYHR073W-A 177 nt1.93□□□□□ -2.1
SHP1P34223 YJL020W-AYJL020W-A 258 nt1.93□□□□□ -2.1
SHP1P34223 ISF1YMR081C 1017 nt1.93□□□□□ -2.1
SHP1P34223 COA6YMR244C-A 315 nt1.93□□□□□ -2.1
SHP1P34223 HCH1YNL281W 462 nt1.93□□□□□ -2.1
SHP1P34223 YPR197CYPR197C 564 nt1.93□□□□□ -2.1
SHP1P34223 YDR341CYDR341C 1824 nt1.93□□□□□ -2.1
SHP1P34223 SLM1YIL105C 2061 nt1.92□□□□□ -2.1
SHP1P34223 AGC1YPR021C 2709 nt1.92□□□□□ -2.1
SHP1P34223 YCR043CYCR043C 384 nt1.92□□□□□ -2.1
SHP1P34223 PHS1YJL097W 654 nt1.92□□□□□ -2.1
SHP1P34223 RPA34YJL148W 702 nt1.92□□□□□ -2.1
SHP1P34223 CDC60YPL160W 3273 nt1.92□□□□□ -2.1
SHP1P34223 RTT101YJL047C 2529 nt1.92□□□□□ -2.1
SHP1P34223 YJR003CYJR003C 1560 nt1.92□□□□□ -2.1
SHP1P34223 YOR343W-BYOR343W-B 5313 nt1.92□□□□□ -2.1
SHP1P34223 TRM3YDL112W 4311 nt1.92□□□□□ -2.1
SHP1P34223 VPS8YAL002W 3825 nt1.91□□□□□ -2.1
SHP1P34223 IST2YBR086C 2841 nt1.91□□□□□ -2.1
SHP1P34223 SYH1YPL105C 2550 nt1.91□□□□□ -2.1
SHP1P34223 AIM9YER080W 1884 nt1.9□□□□□ -2.1
SHP1P34223 PLC1YPL268W 2610 nt1.9□□□□□ -2.1
SHP1P34223 CTF4YPR135W 2784 nt1.9□□□□□ -2.1
SHP1P34223 RPL37BYDR500C 267 nt1.9□□□□□ -2.11
SHP1P34223 RPL42BYHR141C 321 nt1.9□□□□□ -2.11
SHP1P34223 YKL083WYKL083W 615 nt1.9□□□□□ -2.11
SHP1P34223 YAL063C-AYAL063C-A 291 nt1.9□□□□□ -2.11
SHP1P34223 YML003WYML003W 873 nt1.9□□□□□ -2.11
SHP1P34223 YNL058CYNL058C 951 nt1.9□□□□□ -2.11
SHP1P34223 RPL42AYNL162W 321 nt1.9□□□□□ -2.11
SHP1P34223 MMS22YLR320W 4365 nt1.89□□□□□ -2.11
SHP1P34223 YDR008CYDR008C 351 nt1.89□□□□□ -2.11
SHP1P34223 RPS20YHL015W 366 nt1.89□□□□□ -2.11
SHP1P34223 CYB5YNL111C 363 nt1.89□□□□□ -2.11
SHP1P34223 FAB1YFR019W 6837 nt1.89□□□□□ -2.11
SHP1P34223 HER1YOR227W 3741 nt1.89□□□□□ -2.11
SHP1P34223 ZRG8YER033C 3231 nt1.88□□□□□ -2.11
SHP1P34223 RPS27AYKL156W 249 nt1.88□□□□□ -2.11
SHP1P34223 YDL118WYDL118W 381 nt1.87□□□□□ -2.11
SHP1P34223 YHR210CYHR210C 1026 nt1.87□□□□□ -2.11
SHP1P34223 YKL183C-AYKL183C-A 213 nt1.87□□□□□ -2.11
SHP1P34223 CGI121YML036W 546 nt1.87□□□□□ -2.11
SHP1P34223 YPL229WYPL229W 621 nt1.87□□□□□ -2.11
SHP1P34223 TUS1YLR425W 3924 nt1.87□□□□□ -2.11
SHP1P34223 NAM7YMR080C 2916 nt1.87□□□□□ -2.11
SHP1P34223 IRR1YIL026C 3453 nt1.86□□□□□ -2.11
SHP1P34223 RPH1YER169W 2391 nt1.86□□□□□ -2.11
SHP1P34223 CFT1YDR301W 4074 nt1.86□□□□□ -2.11
SHP1P34223 YMR045CYMR045C 5268 nt1.86□□□□□ -2.11
SHP1P34223 VPS34YLR240W 2628 nt1.86□□□□□ -2.11
SHP1P34223 GRR1YJR090C 3456 nt1.86□□□□□ -2.11
SHP1P34223 RTR1YER139C 681 nt1.86□□□□□ -2.11
SHP1P34223 YGR174W-AYGR174W-A 87 nt1.86□□□□□ -2.11
SHP1P34223 YNL114CYNL114C 372 nt1.86□□□□□ -2.11
SHP1P34223 YBL073WYBL073W 312 nt1.86□□□□□ -2.11
SHP1P34223 IRC23YOR044W 474 nt1.86□□□□□ -2.11
SHP1P34223 YPR016W-AYPR016W-A 261 nt1.86□□□□□ -2.11
SHP1P34223 YCR087C-AYCR087C-A 462 nt1.85□□□□□ -2.11
SHP1P34223 YAR053WYAR053W 297 nt1.85□□□□□ -2.11
SHP1P34223 DFG16YOR030W 1860 nt1.84□□□□□ -2.11
SHP1P34223 YCR102W-AYCR102W-A 198 nt1.84□□□□□ -2.11
SHP1P34223 PET309YLR067C 2898 nt1.84□□□□□ -2.12
SHP1P34223 CAT2YML042W 2013 nt1.83□□□□□ -2.12
SHP1P34223 SFB2YNL049C 2631 nt1.83□□□□□ -2.12
SHP1P34223 MCM22YJR135C 720 nt1.83□□□□□ -2.12
SHP1P34223 SIR4YDR227W 4077 nt1.83□□□□□ -2.12
SHP1P34223 UBR2YLR024C 5619 nt1.82□□□□□ -2.12
SHP1P34223 BUD2YKL092C 3315 nt1.82□□□□□ -2.12
SHP1P34223 YDL240C-AYDL240C-A 138 nt1.82□□□□□ -2.12
SHP1P34223 tW(UCA)QtW(UCA)Q 74 nt1.82□□□□□ -2.12
SHP1P34223 HHT1YBR010W 411 nt1.82□□□□□ -2.12
SHP1P34223 PAU18YLL064C 363 nt1.81□□□□□ -2.12
SHP1P34223 PAU6YNR076W 363 nt1.81□□□□□ -2.12
SHP1P34223 BIL1YOR304C-A 231 nt1.81□□□□□ -2.12
SHP1P34223 OSH6YKR003W 1347 nt1.81□□□□□ -2.12
SHP1P34223 PXA2YKL188C 2562 nt1.8□□□□□ -2.12
SHP1P34223 YIL059CYIL059C 366 nt1.8□□□□□ -2.12
SHP1P34223 YLR146W-AYLR146W-A 189 nt1.8□□□□□ -2.12
SHP1P34223 YOR072W-AYOR072W-A 249 nt1.8□□□□□ -2.12
SHP1P34223 YCL046WYCL046W 324 nt1.8□□□□□ -2.12
SHP1P34223 NOP53YPL146C 1368 nt1.8□□□□□ -2.12
SHP1P34223 HDA3YPR179C 1968 nt1.79□□□□□ -2.12
SHP1P34223 SWI5YDR146C 2130 nt1.79□□□□□ -2.12
SHP1P34223 YER088C-AYER088C-A 324 nt1.79□□□□□ -2.12
SHP1P34223 PAC1YOR269W 1485 nt1.79□□□□□ -2.12
SHP1P34223 NUP192YJL039C 5052 nt1.78□□□□□ -2.12
SHP1P34223 PDR8YLR266C 2106 nt1.78□□□□□ -2.12
SHP1P34223 YHL041WYHL041W 450 nt1.78□□□□□ -2.12
SHP1P34223 MRPL31YKL138C 396 nt1.78□□□□□ -2.12
SHP1P34223 YAF9YNL107W 681 nt1.78□□□□□ -2.12
SHP1P34223 CDC31YOR257W 486 nt1.78□□□□□ -2.12
SHP1P34223 YPL038W-AYPL038W-A 192 nt1.78□□□□□ -2.12
SHP1P34223 ATG9YDL149W 2994 nt1.78□□□□□ -2.12
Retrieved 100 of 7,029 protein–RNA pairs in 47 ms