Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 YJR114WYJR114W 393 nt12.63□□□□□ -0.39
SSM4P40318 QDR2YIL121W 1629 nt12.63□□□□□ -0.39
SSM4P40318 ABZ2YMR289W 1125 nt12.62□□□□□ -0.39
SSM4P40318 PAU19YMR325W 375 nt12.62□□□□□ -0.39
SSM4P40318 HOL1YNR055C 1761 nt12.61□□□□□ -0.39
SSM4P40318 ELO1YJL196C 933 nt12.61□□□□□ -0.39
SSM4P40318 ITR2YOL103W 1830 nt12.6□□□□□ -0.39
SSM4P40318 TVP23YDR084C 600 nt12.58□□□□□ -0.4
SSM4P40318 YLR046CYLR046C 813 nt12.58□□□□□ -0.4
SSM4P40318 SPE2YOL052C 1191 nt12.58□□□□□ -0.4
SSM4P40318 GID8YMR135C 1368 nt12.56□□□□□ -0.4
SSM4P40318 DIG1YPL049C 1359 nt12.56□□□□□ -0.4
SSM4P40318 COQ8YGL119W 1506 nt12.56□□□□□ -0.4
SSM4P40318 PAR32YDL173W 888 nt12.55□□□□□ -0.4
SSM4P40318 NAP1YKR048C 1254 nt12.55□□□□□ -0.4
SSM4P40318 SLG1YOR008C 1137 nt12.55□□□□□ -0.4
SSM4P40318 KES1YPL145C 1305 nt12.55□□□□□ -0.4
SSM4P40318 MRS6YOR370C 1812 nt12.54□□□□□ -0.4
SSM4P40318 YNR064CYNR064C 873 nt12.54□□□□□ -0.4
SSM4P40318 IGD1YFR017C 588 nt12.53□□□□□ -0.4
SSM4P40318 LSR1LSR1 1175 nt12.53□□□□□ -0.4
SSM4P40318 TPC1YGR096W 945 nt12.52□□□□□ -0.41
SSM4P40318 TIP1YBR067C 633 nt12.52□□□□□ -0.41
SSM4P40318 DLD3YEL071W 1491 nt12.51□□□□□ -0.41
SSM4P40318 KRE1YNL322C 942 nt12.51□□□□□ -0.41
SSM4P40318 YHR219WYHR219W 1875 nt12.5□□□□□ -0.41
SSM4P40318 ENO2YHR174W 1314 nt12.49□□□□□ -0.41
SSM4P40318 SFL1YOR140W 2301 nt12.47□□□□□ -0.41
SSM4P40318 ENT4YLL038C 744 nt12.46□□□□□ -0.41
SSM4P40318 SGA1YIL099W 1650 nt12.46□□□□□ -0.41
SSM4P40318 YKL133CYKL133C 1392 nt12.45□□□□□ -0.42
SSM4P40318 ADH3YMR083W 1128 nt12.44□□□□□ -0.42
SSM4P40318 tA(AGC)DtA(AGC)D 73 nt12.43□□□□□ -0.42
SSM4P40318 tA(AGC)FtA(AGC)F 73 nt12.43□□□□□ -0.42
SSM4P40318 tA(AGC)GtA(AGC)G 73 nt12.43□□□□□ -0.42
SSM4P40318 tA(AGC)HtA(AGC)H 73 nt12.43□□□□□ -0.42
SSM4P40318 tA(AGC)JtA(AGC)J 73 nt12.43□□□□□ -0.42
SSM4P40318 tA(AGC)K1tA(AGC)K1 73 nt12.43□□□□□ -0.42
SSM4P40318 tA(AGC)K2tA(AGC)K2 73 nt12.43□□□□□ -0.42
SSM4P40318 tA(AGC)LtA(AGC)L 73 nt12.43□□□□□ -0.42
SSM4P40318 tA(AGC)M1tA(AGC)M1 73 nt12.43□□□□□ -0.42
SSM4P40318 tA(AGC)M2tA(AGC)M2 73 nt12.43□□□□□ -0.42
SSM4P40318 tA(AGC)PtA(AGC)P 73 nt12.43□□□□□ -0.42
SSM4P40318 PHB2YGR231C 933 nt12.42□□□□□ -0.42
SSM4P40318 AMF1YOR378W 1548 nt12.42□□□□□ -0.42
SSM4P40318 ZAP1YJL056C 2643 nt12.42□□□□□ -0.42
SSM4P40318 UGP1YKL035W 1500 nt12.41□□□□□ -0.42
SSM4P40318 PCP1YGR101W 1041 nt12.41□□□□□ -0.42
SSM4P40318 THP3YPR045C 1413 nt12.41□□□□□ -0.42
SSM4P40318 SWT21YNL187W 1074 nt12.4□□□□□ -0.42
SSM4P40318 SUV3YPL029W 2214 nt12.39□□□□□ -0.43
SSM4P40318 YKL053WYKL053W 375 nt12.37□□□□□ -0.43
SSM4P40318 MET1YKR069W 1782 nt12.37□□□□□ -0.43
SSM4P40318 NAM8YHR086W 1572 nt12.36□□□□□ -0.43
SSM4P40318 IPL1YPL209C 1104 nt12.35□□□□□ -0.43
SSM4P40318 FLX1YIL134W 936 nt12.34□□□□□ -0.43
SSM4P40318 CRC1YOR100C 984 nt12.32□□□□□ -0.44
SSM4P40318 KEL3YPL263C 1956 nt12.31□□□□□ -0.44
SSM4P40318 HSL7YBR133C 2484 nt12.31□□□□□ -0.44
SSM4P40318 YKR012CYKR012C 378 nt12.31□□□□□ -0.44
SSM4P40318 YCR025CYCR025C 411 nt12.3□□□□□ -0.44
SSM4P40318 LYS20YDL182W 1287 nt12.29□□□□□ -0.44
SSM4P40318 MOB1YIL106W 945 nt12.29□□□□□ -0.44
SSM4P40318 VMA11YPL234C 495 nt12.29□□□□□ -0.44
SSM4P40318 YMR265CYMR265C 1386 nt12.29□□□□□ -0.44
SSM4P40318 HAP5YOR358W 729 nt12.27□□□□□ -0.45
SSM4P40318 RIM2YBR192W 1134 nt12.27□□□□□ -0.45
SSM4P40318 ACO2YJL200C 2370 nt12.26□□□□□ -0.45
SSM4P40318 LEU2YCL018W 1095 nt12.25□□□□□ -0.45
SSM4P40318 SNX3YOR357C 489 nt12.23□□□□□ -0.45
SSM4P40318 YJL225CYJL225C 5277 nt12.22□□□□□ -0.45
SSM4P40318 TIM44YIL022W 1296 nt12.21□□□□□ -0.45
SSM4P40318 REX2YLR059C 810 nt12.21□□□□□ -0.45
SSM4P40318 SAM50YNL026W 1455 nt12.21□□□□□ -0.45
SSM4P40318 SDS24YBR214W 1584 nt12.21□□□□□ -0.46
SSM4P40318 SSL2YIL143C 2532 nt12.21□□□□□ -0.46
SSM4P40318 TGA1tA(UGC)A 73 nt12.2□□□□□ -0.46
SSM4P40318 tA(UGC)EtA(UGC)E 73 nt12.2□□□□□ -0.46
SSM4P40318 tA(UGC)GtA(UGC)G 73 nt12.2□□□□□ -0.46
SSM4P40318 tA(UGC)LtA(UGC)L 73 nt12.2□□□□□ -0.46
SSM4P40318 tA(UGC)OtA(UGC)O 73 nt12.2□□□□□ -0.46
SSM4P40318 FSH2YMR222C 672 nt12.2□□□□□ -0.46
SSM4P40318 HIS2YFR025C 1008 nt12.18□□□□□ -0.46
SSM4P40318 RPD3YNL330C 1302 nt12.18□□□□□ -0.46
SSM4P40318 ODC1YPL134C 933 nt12.17□□□□□ -0.46
SSM4P40318 KGD2YDR148C 1392 nt12.17□□□□□ -0.46
SSM4P40318 SAN1YDR143C 1833 nt12.16□□□□□ -0.46
SSM4P40318 VBA3YCL069W 1377 nt12.15□□□□□ -0.46
SSM4P40318 SRP54YPR088C 1626 nt12.15□□□□□ -0.46
SSM4P40318 RIM8YGL045W 1629 nt12.14□□□□□ -0.47
SSM4P40318 SWM1YDR260C 513 nt12.13□□□□□ -0.47
SSM4P40318 SER2YGR208W 930 nt12.11□□□□□ -0.47
SSM4P40318 YCP4YCR004C 744 nt12.1□□□□□ -0.47
SSM4P40318 snR31snR31 225 nt12.09□□□□□ -0.47
SSM4P40318 YMR209CYMR209C 1374 nt12.07□□□□□ -0.48
SSM4P40318 DPL1YDR294C 1770 nt12.07□□□□□ -0.48
SSM4P40318 RPN14YGL004C 1254 nt12.06□□□□□ -0.48
SSM4P40318 CYC3YAL039C 810 nt12.06□□□□□ -0.48
SSM4P40318 RPC31YNL151C 756 nt12.06□□□□□ -0.48
SSM4P40318 FCY1YPR062W 477 nt12.06□□□□□ -0.48
Retrieved 100 of 7,029 protein–RNA pairs in 67.3 ms