Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 AP001160.3-201ENST00000601484 763 ntBASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC27.68■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC27.67■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 CASP6-205ENST00000505486 538 ntTSL 4 BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 TBCB-214ENST00000629269 413 ntTSL 5 BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC27.66■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC27.65■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC27.65■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 FAM210CP-201ENST00000445714 574 ntBASIC27.65■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 RHEB-204ENST00000472642 900 ntTSL 3 BASIC27.65■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC27.65■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC27.64■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC27.64■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC27.64■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 POU5F1P3-201ENST00000428824 1078 ntBASIC27.64■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC27.64■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 GALNS-213ENST00000569433 723 ntTSL 3 BASIC27.64■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC27.64■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC27.64■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
SENP3-EIF4A1A0A087X0R7 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC27.64■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC27.63■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 PRORSD1P-201ENST00000295112 541 ntBASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC27.61■■■□□ 2.01
SENP3-EIF4A1A0A087X0R7 HSCB-202ENST00000398941 955 ntTSL 2 BASIC27.61■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms