Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.28■■□□□ 1
Col6a4A2AX52 Gm11599-201ENSMUST00000118720 878 ntBASIC21.28■■□□□ 1
Col6a4A2AX52 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col6a4A2AX52 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col6a4A2AX52 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col6a4A2AX52 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Col6a4A2AX52 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col6a4A2AX52 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col6a4A2AX52 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Col6a4A2AX52 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
Col6a4A2AX52 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Col6a4A2AX52 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col6a4A2AX52 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col6a4A2AX52 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col6a4A2AX52 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC21.26■□□□□ 0.99
Col6a4A2AX52 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Col6a4A2AX52 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Col6a4A2AX52 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Col6a4A2AX52 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC21.26■□□□□ 0.99
Col6a4A2AX52 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col6a4A2AX52 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Col6a4A2AX52 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Col6a4A2AX52 Gm11175-201ENSMUST00000116172 543 ntBASIC21.22■□□□□ 0.99
Col6a4A2AX52 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col6a4A2AX52 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Col6a4A2AX52 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC21.2■□□□□ 0.98
Col6a4A2AX52 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Col6a4A2AX52 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC21.19■□□□□ 0.98
Col6a4A2AX52 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC21.18■□□□□ 0.98
Col6a4A2AX52 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col6a4A2AX52 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Col6a4A2AX52 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col6a4A2AX52 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a4A2AX52 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col6a4A2AX52 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Col6a4A2AX52 Nkain2-201ENSMUST00000092602 558 ntBASIC21.17■□□□□ 0.98
Col6a4A2AX52 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col6a4A2AX52 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col6a4A2AX52 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col6a4A2AX52 Cap2-205ENSMUST00000225824 1634 ntBASIC21.16■□□□□ 0.98
Col6a4A2AX52 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col6a4A2AX52 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col6a4A2AX52 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col6a4A2AX52 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col6a4A2AX52 Gm30346-201ENSMUST00000218641 1699 ntBASIC21.13■□□□□ 0.97
Col6a4A2AX52 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.12■□□□□ 0.97
Col6a4A2AX52 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC21.11■□□□□ 0.97
Col6a4A2AX52 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
Col6a4A2AX52 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Col6a4A2AX52 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col6a4A2AX52 Mir6538-201ENSMUST00000183713 110 ntBASIC21.1■□□□□ 0.97
Col6a4A2AX52 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Col6a4A2AX52 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col6a4A2AX52 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col6a4A2AX52 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Col6a4A2AX52 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Col6a4A2AX52 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Col6a4A2AX52 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.06■□□□□ 0.96
Col6a4A2AX52 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col6a4A2AX52 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col6a4A2AX52 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col6a4A2AX52 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC21.04■□□□□ 0.96
Col6a4A2AX52 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col6a4A2AX52 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col6a4A2AX52 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col6a4A2AX52 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col6a4A2AX52 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col6a4A2AX52 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Col6a4A2AX52 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col6a4A2AX52 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC21.01■□□□□ 0.95
Col6a4A2AX52 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Col6a4A2AX52 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col6a4A2AX52 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Col6a4A2AX52 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col6a4A2AX52 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Col6a4A2AX52 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21■□□□□ 0.95
Col6a4A2AX52 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col6a4A2AX52 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col6a4A2AX52 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col6a4A2AX52 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col6a4A2AX52 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col6a4A2AX52 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col6a4A2AX52 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a4A2AX52 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col6a4A2AX52 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.94■□□□□ 0.94
Col6a4A2AX52 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Col6a4A2AX52 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.93■□□□□ 0.94
Col6a4A2AX52 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.93■□□□□ 0.94
Col6a4A2AX52 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.93■□□□□ 0.94
Col6a4A2AX52 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col6a4A2AX52 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Col6a4A2AX52 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col6a4A2AX52 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC20.91■□□□□ 0.94
Col6a4A2AX52 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col6a4A2AX52 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col6a4A2AX52 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col6a4A2AX52 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC20.88■□□□□ 0.93
Col6a4A2AX52 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.87■□□□□ 0.93
Col6a4A2AX52 Gm2415-204ENSMUST00000190235 2004 ntBASIC20.87■□□□□ 0.93
Col6a4A2AX52 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms