Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Gm25239-201ENSMUST00000174915 86 ntBASIC33.76■■■□□ 2.99
Col6a4A2AX52 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
Col6a4A2AX52 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
Col6a4A2AX52 Gm24109-201ENSMUST00000175489 103 ntBASIC29.47■■■□□ 2.31
Col6a4A2AX52 Gm15042-201ENSMUST00000120212 883 ntBASIC28.86■■■□□ 2.21
Col6a4A2AX52 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
Col6a4A2AX52 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
Col6a4A2AX52 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
Col6a4A2AX52 Gm15045-201ENSMUST00000117359 883 ntBASIC28.3■■■□□ 2.12
Col6a4A2AX52 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
Col6a4A2AX52 Gm23366-201ENSMUST00000175022 89 ntBASIC27.95■■■□□ 2.07
Col6a4A2AX52 AC153911.1-202ENSMUST00000218534 1034 ntBASIC27.69■■■□□ 2.02
Col6a4A2AX52 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC27.4■■□□□ 1.98
Col6a4A2AX52 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC27.34■■□□□ 1.97
Col6a4A2AX52 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
Col6a4A2AX52 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
Col6a4A2AX52 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Col6a4A2AX52 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Col6a4A2AX52 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Col6a4A2AX52 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC26.82■■□□□ 1.88
Col6a4A2AX52 Gm25238-201ENSMUST00000174914 89 ntBASIC26.81■■□□□ 1.88
Col6a4A2AX52 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
Col6a4A2AX52 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Col6a4A2AX52 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Col6a4A2AX52 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Col6a4A2AX52 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
Col6a4A2AX52 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Col6a4A2AX52 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC26.09■■□□□ 1.77
Col6a4A2AX52 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC26.03■■□□□ 1.76
Col6a4A2AX52 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.75
Col6a4A2AX52 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25.93■■□□□ 1.74
Col6a4A2AX52 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
Col6a4A2AX52 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC25.88■■□□□ 1.73
Col6a4A2AX52 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
Col6a4A2AX52 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Col6a4A2AX52 Gm25262-201ENSMUST00000174934 133 ntBASIC25.77■■□□□ 1.72
Col6a4A2AX52 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC25.67■■□□□ 1.7
Col6a4A2AX52 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC25.66■■□□□ 1.7
Col6a4A2AX52 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
Col6a4A2AX52 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Col6a4A2AX52 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC25.56■■□□□ 1.68
Col6a4A2AX52 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC25.52■■□□□ 1.68
Col6a4A2AX52 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC25.46■■□□□ 1.67
Col6a4A2AX52 Gm27325-201ENSMUST00000175467 74 ntBASIC25.44■■□□□ 1.66
Col6a4A2AX52 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC25.43■■□□□ 1.66
Col6a4A2AX52 Gm26115-201ENSMUST00000175605 87 ntBASIC25.41■■□□□ 1.66
Col6a4A2AX52 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Col6a4A2AX52 Gm8109-201ENSMUST00000194076 746 ntBASIC25.31■■□□□ 1.64
Col6a4A2AX52 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC25.28■■□□□ 1.64
Col6a4A2AX52 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC25.24■■□□□ 1.63
Col6a4A2AX52 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
Col6a4A2AX52 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Col6a4A2AX52 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Col6a4A2AX52 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Col6a4A2AX52 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
Col6a4A2AX52 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Col6a4A2AX52 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Col6a4A2AX52 Rab21-202ENSMUST00000218831 843 ntBASIC25.11■■□□□ 1.61
Col6a4A2AX52 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC25■■□□□ 1.59
Col6a4A2AX52 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC24.97■■□□□ 1.59
Col6a4A2AX52 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Col6a4A2AX52 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Col6a4A2AX52 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC24.85■■□□□ 1.57
Col6a4A2AX52 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC24.83■■□□□ 1.57
Col6a4A2AX52 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Col6a4A2AX52 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24.73■■□□□ 1.55
Col6a4A2AX52 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.66■■□□□ 1.54
Col6a4A2AX52 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC24.65■■□□□ 1.54
Col6a4A2AX52 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
Col6a4A2AX52 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Col6a4A2AX52 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Col6a4A2AX52 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Col6a4A2AX52 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
Col6a4A2AX52 Psd-208ENSMUST00000224556 2034 ntBASIC24.47■■□□□ 1.51
Col6a4A2AX52 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC24.46■■□□□ 1.51
Col6a4A2AX52 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Col6a4A2AX52 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC24.4■■□□□ 1.5
Col6a4A2AX52 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Col6a4A2AX52 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Col6a4A2AX52 Gm17082-201ENSMUST00000166043 1091 ntBASIC24.35■■□□□ 1.49
Col6a4A2AX52 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Col6a4A2AX52 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC24.31■■□□□ 1.48
Col6a4A2AX52 Gm24804-201ENSMUST00000174982 85 ntBASIC24.29■■□□□ 1.48
Col6a4A2AX52 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC24.27■■□□□ 1.48
Col6a4A2AX52 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
Col6a4A2AX52 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Col6a4A2AX52 Gm27322-201ENSMUST00000184007 104 ntBASIC24.13■■□□□ 1.45
Col6a4A2AX52 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC24.12■■□□□ 1.45
Col6a4A2AX52 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC24.1■■□□□ 1.45
Col6a4A2AX52 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC24.09■■□□□ 1.45
Col6a4A2AX52 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Col6a4A2AX52 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC24.08■■□□□ 1.45
Col6a4A2AX52 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Col6a4A2AX52 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Col6a4A2AX52 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
Col6a4A2AX52 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Col6a4A2AX52 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
Col6a4A2AX52 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC24.01■■□□□ 1.43
Col6a4A2AX52 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC24.01■■□□□ 1.43
Col6a4A2AX52 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC23.99■■□□□ 1.43
Retrieved 100 of 76,532 protein–RNA pairs in 16.1 ms