Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC26.34■■□□□ 1.81
SYNE4Q8N205 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SYNE4Q8N205 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC26.34■■□□□ 1.81
SYNE4Q8N205 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC26.34■■□□□ 1.81
SYNE4Q8N205 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC26.34■■□□□ 1.81
SYNE4Q8N205 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SYNE4Q8N205 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.34■■□□□ 1.81
SYNE4Q8N205 C11orf96-202ENST00000528572 1834 ntBASIC26.34■■□□□ 1.81
SYNE4Q8N205 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC26.34■■□□□ 1.81
SYNE4Q8N205 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SYNE4Q8N205 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SYNE4Q8N205 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SYNE4Q8N205 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC26.34■■□□□ 1.81
SYNE4Q8N205 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SYNE4Q8N205 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC26.33■■□□□ 1.81
SYNE4Q8N205 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
SYNE4Q8N205 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC26.33■■□□□ 1.81
SYNE4Q8N205 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
SYNE4Q8N205 DUSP5P2-201ENST00000426873 1033 ntBASIC26.33■■□□□ 1.81
SYNE4Q8N205 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC26.33■■□□□ 1.81
SYNE4Q8N205 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC26.33■■□□□ 1.81
SYNE4Q8N205 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC26.33■■□□□ 1.81
SYNE4Q8N205 MYC-209ENST00000641252 345 ntBASIC26.33■■□□□ 1.81
SYNE4Q8N205 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
SYNE4Q8N205 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SYNE4Q8N205 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SYNE4Q8N205 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
SYNE4Q8N205 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
SYNE4Q8N205 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC26.32■■□□□ 1.8
SYNE4Q8N205 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
SYNE4Q8N205 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC26.32■■□□□ 1.8
SYNE4Q8N205 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SYNE4Q8N205 AC098590.1-201ENST00000468126 897 ntBASIC26.32■■□□□ 1.8
SYNE4Q8N205 RARRES2P4-201ENST00000514074 484 ntBASIC26.32■■□□□ 1.8
SYNE4Q8N205 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SYNE4Q8N205 AC243732.1-201ENST00000612648 864 ntBASIC26.32■■□□□ 1.8
SYNE4Q8N205 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC26.32■■□□□ 1.8
SYNE4Q8N205 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SYNE4Q8N205 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC26.31■■□□□ 1.8
SYNE4Q8N205 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC26.31■■□□□ 1.8
SYNE4Q8N205 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SYNE4Q8N205 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
SYNE4Q8N205 GALC-202ENST00000393568 2054 ntTSL 2 BASIC26.31■■□□□ 1.8
SYNE4Q8N205 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC26.31■■□□□ 1.8
SYNE4Q8N205 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC26.31■■□□□ 1.8
SYNE4Q8N205 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC26.31■■□□□ 1.8
SYNE4Q8N205 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC26.31■■□□□ 1.8
SYNE4Q8N205 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC26.31■■□□□ 1.8
SYNE4Q8N205 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC26.3■■□□□ 1.8
SYNE4Q8N205 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SYNE4Q8N205 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC26.3■■□□□ 1.8
SYNE4Q8N205 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SYNE4Q8N205 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC26.3■■□□□ 1.8
SYNE4Q8N205 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC26.3■■□□□ 1.8
SYNE4Q8N205 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC26.3■■□□□ 1.8
SYNE4Q8N205 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC26.3■■□□□ 1.8
SYNE4Q8N205 BET1L-207ENST00000529614 560 ntTSL 5 BASIC26.3■■□□□ 1.8
SYNE4Q8N205 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC26.3■■□□□ 1.8
SYNE4Q8N205 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SYNE4Q8N205 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SYNE4Q8N205 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
SYNE4Q8N205 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
SYNE4Q8N205 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SYNE4Q8N205 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC26.3■■□□□ 1.8
SYNE4Q8N205 FAM99A-202ENST00000538190 1989 ntBASIC26.29■■□□□ 1.8
SYNE4Q8N205 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SYNE4Q8N205 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SYNE4Q8N205 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SYNE4Q8N205 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC26.29■■□□□ 1.8
SYNE4Q8N205 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SYNE4Q8N205 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
SYNE4Q8N205 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC26.29■■□□□ 1.8
SYNE4Q8N205 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SYNE4Q8N205 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC26.29■■□□□ 1.8
SYNE4Q8N205 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
SYNE4Q8N205 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC26.29■■□□□ 1.8
SYNE4Q8N205 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SYNE4Q8N205 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SYNE4Q8N205 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
SYNE4Q8N205 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC26.29■■□□□ 1.8
SYNE4Q8N205 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SYNE4Q8N205 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SYNE4Q8N205 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
SYNE4Q8N205 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC26.29■■□□□ 1.8
SYNE4Q8N205 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC26.29■■□□□ 1.8
SYNE4Q8N205 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
SYNE4Q8N205 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC26.28■■□□□ 1.8
SYNE4Q8N205 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
SYNE4Q8N205 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SYNE4Q8N205 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC26.28■■□□□ 1.8
SYNE4Q8N205 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC26.28■■□□□ 1.8
SYNE4Q8N205 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
SYNE4Q8N205 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SYNE4Q8N205 AC068473.5-201ENST00000616428 2072 ntBASIC26.27■■□□□ 1.8
SYNE4Q8N205 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC26.27■■□□□ 1.8
SYNE4Q8N205 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
SYNE4Q8N205 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SYNE4Q8N205 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
SYNE4Q8N205 AC091799.1-201ENST00000422823 811 ntBASIC26.27■■□□□ 1.8
SYNE4Q8N205 OR2A1-AS1-201ENST00000462305 773 ntBASIC26.27■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms