Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 ERF2YLR246W 1080 nt9.97□□□□□ -0.81
CUP9P41817 SPC25YER018C 666 nt9.96□□□□□ -0.82
CUP9P41817 STB1YNL309W 1263 nt9.96□□□□□ -0.82
CUP9P41817 PEX25YPL112C 1185 nt9.96□□□□□ -0.82
CUP9P41817 BDH1YAL060W 1149 nt9.95□□□□□ -0.82
CUP9P41817 YFL067WYFL067W 528 nt9.94□□□□□ -0.82
CUP9P41817 YLR415CYLR415C 339 nt9.94□□□□□ -0.82
CUP9P41817 DDR2YOL052C-A 186 nt9.94□□□□□ -0.82
CUP9P41817 YSP3YOR003W 1437 nt9.93□□□□□ -0.82
CUP9P41817 GPI16YHR188C 1833 nt9.93□□□□□ -0.82
CUP9P41817 CCT4YDL143W 1587 nt9.92□□□□□ -0.82
CUP9P41817 YDR524C-BYDR524C-B 201 nt9.92□□□□□ -0.82
CUP9P41817 YFL066CYFL066C 1179 nt9.92□□□□□ -0.82
CUP9P41817 RTF1YGL244W 1677 nt9.92□□□□□ -0.82
CUP9P41817 ATF2YGR177C 1608 nt9.91□□□□□ -0.82
CUP9P41817 CRR1YLR213C 1269 nt9.89□□□□□ -0.83
CUP9P41817 YNL115CYNL115C 1935 nt9.89□□□□□ -0.83
CUP9P41817 YJL225CYJL225C 5277 nt9.89□□□□□ -0.83
CUP9P41817 YDL086C-AYDL086C-A 435 nt9.87□□□□□ -0.83
CUP9P41817 SWC5YBR231C 912 nt9.87□□□□□ -0.83
CUP9P41817 VPS60YDR486C 690 nt9.85□□□□□ -0.83
CUP9P41817 SBA1YKL117W 651 nt9.85□□□□□ -0.83
CUP9P41817 BOP3YNL042W 1191 nt9.85□□□□□ -0.83
CUP9P41817 NVJ2YPR091C 2313 nt9.85□□□□□ -0.83
CUP9P41817 NCP1YHR042W 2076 nt9.84□□□□□ -0.83
CUP9P41817 NAT4YMR069W 858 nt9.84□□□□□ -0.83
CUP9P41817 ANP1YEL036C 1503 nt9.82□□□□□ -0.84
CUP9P41817 FEN2YCR028C 1539 nt9.82□□□□□ -0.84
CUP9P41817 PTK1YKL198C 1989 nt9.8□□□□□ -0.84
CUP9P41817 GLK1YCL040W 1503 nt9.8□□□□□ -0.84
CUP9P41817 HEM12YDR047W 1089 nt9.79□□□□□ -0.84
CUP9P41817 VPS75YNL246W 795 nt9.79□□□□□ -0.84
CUP9P41817 SNG1YGR197C 1644 nt9.78□□□□□ -0.84
CUP9P41817 ALG3YBL082C 1377 nt9.78□□□□□ -0.84
CUP9P41817 RDN37-1RDN37-1 5354 nt9.76□□□□□ -0.85
CUP9P41817 RDN37-2RDN37-2 5354 nt9.76□□□□□ -0.85
CUP9P41817 LYS4YDR234W 2082 nt9.76□□□□□ -0.85
CUP9P41817 SPT8YLR055C 1809 nt9.75□□□□□ -0.85
CUP9P41817 MIR1YJR077C 936 nt9.73□□□□□ -0.85
CUP9P41817 MIC10YCL057C-A 294 nt9.73□□□□□ -0.85
CUP9P41817 MSF1YPR047W 1410 nt9.73□□□□□ -0.85
CUP9P41817 THI74YDR438W 1113 nt9.72□□□□□ -0.85
CUP9P41817 YIR016WYIR016W 798 nt9.72□□□□□ -0.85
CUP9P41817 TIM17YJL143W 477 nt9.68□□□□□ -0.86
CUP9P41817 PAU7YAR020C 168 nt9.65□□□□□ -0.86
CUP9P41817 BNA2YJR078W 1362 nt9.62□□□□□ -0.87
CUP9P41817 YHR056W-AYHR056W-A 435 nt9.61□□□□□ -0.87
CUP9P41817 DAT1YML113W 747 nt9.6□□□□□ -0.87
CUP9P41817 SHM2YLR058C 1410 nt9.59□□□□□ -0.87
CUP9P41817 MIC12YBR262C 321 nt9.58□□□□□ -0.88
CUP9P41817 XDJ1YLR090W 1380 nt9.58□□□□□ -0.88
CUP9P41817 YFL054CYFL054C 1941 nt9.57□□□□□ -0.88
CUP9P41817 UBA4YHR111W 1323 nt9.56□□□□□ -0.88
CUP9P41817 RAX1YOR301W 1308 nt9.56□□□□□ -0.88
CUP9P41817 SHB17YKR043C 816 nt9.54□□□□□ -0.88
CUP9P41817 YGL034CYGL034C 366 nt9.52□□□□□ -0.89
CUP9P41817 GDH3YAL062W 1374 nt9.51□□□□□ -0.89
CUP9P41817 YGR201CYGR201C 678 nt9.51□□□□□ -0.89
CUP9P41817 YSR3YKR053C 1215 nt9.51□□□□□ -0.89
CUP9P41817 SGT2YOR007C 1041 nt9.5□□□□□ -0.89
CUP9P41817 NIT1YIL164C 600 nt9.49□□□□□ -0.89
CUP9P41817 YMR244WYMR244W 1068 nt9.49□□□□□ -0.89
CUP9P41817 HHO1YPL127C 777 nt9.49□□□□□ -0.89
CUP9P41817 YDR010CYDR010C 333 nt9.47□□□□□ -0.89
CUP9P41817 GLR1YPL091W 1452 nt9.47□□□□□ -0.89
CUP9P41817 YCR087WYCR087W 516 nt9.44□□□□□ -0.9
CUP9P41817 RET2YFR051C 1641 nt9.43□□□□□ -0.9
CUP9P41817 XYL2YLR070C 1071 nt9.42□□□□□ -0.9
CUP9P41817 NDI1YML120C 1542 nt9.41□□□□□ -0.9
CUP9P41817 AVT6YER119C 1347 nt9.41□□□□□ -0.9
CUP9P41817 PHO89YBR296C 1725 nt9.4□□□□□ -0.9
CUP9P41817 RBG1YAL036C 1110 nt9.38□□□□□ -0.91
CUP9P41817 SWE1YJL187C 2460 nt9.38□□□□□ -0.91
CUP9P41817 GOR1YNL274C 1053 nt9.37□□□□□ -0.91
CUP9P41817 AIM45YPR004C 1035 nt9.36□□□□□ -0.91
CUP9P41817 YCR102CYCR102C 1107 nt9.33□□□□□ -0.92
CUP9P41817 RBG2YGR173W 1107 nt9.33□□□□□ -0.92
CUP9P41817 MRP20YDR405W 792 nt9.31□□□□□ -0.92
CUP9P41817 CCA1YER168C 1641 nt9.3□□□□□ -0.92
CUP9P41817 YMR226CYMR226C 804 nt9.28□□□□□ -0.92
CUP9P41817 AGP1YCL025C 1902 nt9.28□□□□□ -0.92
CUP9P41817 COQ2YNR041C 1119 nt9.27□□□□□ -0.93
CUP9P41817 SFA1YDL168W 1161 nt9.24□□□□□ -0.93
CUP9P41817 DUT1YBR252W 444 nt9.24□□□□□ -0.93
CUP9P41817 YHL019W-AYHL019W-A 594 nt9.22□□□□□ -0.93
CUP9P41817 RPL4BYDR012W 1089 nt9.2□□□□□ -0.94
CUP9P41817 RPL4AYBR031W 1089 nt9.2□□□□□ -0.94
CUP9P41817 NBP35YGL091C 987 nt9.19□□□□□ -0.94
CUP9P41817 CLB6YGR109C 1143 nt9.19□□□□□ -0.94
CUP9P41817 TIR3YIL011W 810 nt9.18□□□□□ -0.94
CUP9P41817 YLR111WYLR111W 333 nt9.17□□□□□ -0.94
CUP9P41817 DUS1YML080W 1272 nt9.16□□□□□ -0.94
CUP9P41817 BOR1YNL275W 1731 nt9.16□□□□□ -0.94
CUP9P41817 RPS14BYJL191W 417 nt9.13□□□□□ -0.95
CUP9P41817 UTH1YKR042W 1098 nt9.13□□□□□ -0.95
CUP9P41817 SHH4YLR164W 507 nt9.12□□□□□ -0.95
CUP9P41817 HSP60YLR259C 1719 nt9.11□□□□□ -0.95
CUP9P41817 YML089CYML089C 369 nt9.1□□□□□ -0.95
CUP9P41817 SDH5YOL071W 489 nt9.1□□□□□ -0.95
CUP9P41817 STR3YGL184C 1398 nt9.1□□□□□ -0.95
Retrieved 100 of 7,029 protein–RNA pairs in 25.7 ms