Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PRIM1-202ENST00000546761 381 ntTSL 35.93□□□□□ -1.461e-7■□□□□ 8.1
YBX3P16989 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.721e-7■□□□□ 8.1
YBX3P16989 ZNF721-204ENST00000507078 355 ntTSL 53.12□□□□□ -1.911e-7■□□□□ 8.1
YBX3P16989 LDHB-207ENST00000535112 252 ntTSL 513.25□□□□□ -0.292e-29■□□□□ 8.1
YBX3P16989 AC026366.1-201ENST00000488803 879 ntBASIC26.91■■□□□ 1.93e-8■□□□□ 8.1
YBX3P16989 CUL4A-210ENST00000494985 292 ntTSL 529.99■■■□□ 2.397e-9■□□□□ 8.1
YBX3P16989 CUL4A-208ENST00000474116 866 ntTSL 224.65■■□□□ 1.547e-9■□□□□ 8.1
YBX3P16989 MAP1LC3B-208ENST00000570189 1259 ntTSL 1 (best)22.89■■□□□ 1.257e-9■□□□□ 8.1
YBX3P16989 FECH-208ENST00000591977 544 ntTSL 55.4□□□□□ -1.547e-9■□□□□ 8.1
YBX3P16989 RPL26-203ENST00000578115 569 ntTSL 27.98□□□□□ -1.131e-323■□□□□ 8.1
YBX3P16989 GALNT11-212ENST00000482812 580 ntTSL 430.46■■■□□ 2.477e-9■□□□□ 8.1
YBX3P16989 GALNT11-210ENST00000447778 1231 ntTSL 523.16■■□□□ 1.37e-9■□□□□ 8.1
YBX3P16989 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.467e-9■□□□□ 8.1
YBX3P16989 GTF3C2-204ENST00000423998 828 ntTSL 517.36■□□□□ 0.377e-9■□□□□ 8.1
YBX3P16989 GALNT11-204ENST00000423337 580 ntTSL 316.97■□□□□ 0.317e-9■□□□□ 8.1
YBX3P16989 GTF3C2-208ENST00000457748 557 ntTSL 515.23■□□□□ 0.037e-9■□□□□ 8.1
YBX3P16989 GALNT11-208ENST00000434507 2747 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.417e-9■□□□□ 8.1
YBX3P16989 PKP4-207ENST00000457109 520 ntTSL 311.96□□□□□ -0.497e-9■□□□□ 8.1
YBX3P16989 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC9.38□□□□□ -0.917e-9■□□□□ 8.1
YBX3P16989 TCF12-211ENST00000559216 475 ntTSL 49.05□□□□□ -0.967e-9■□□□□ 8.1
YBX3P16989 TCF12-220ENST00000560887 540 ntTSL 48.15□□□□□ -1.17e-9■□□□□ 8.1
YBX3P16989 GALNT11-202ENST00000419245 716 ntTSL 38□□□□□ -1.137e-9■□□□□ 8.1
YBX3P16989 GALNT11-211ENST00000447796 717 ntTSL 36.57□□□□□ -1.367e-9■□□□□ 8.1
YBX3P16989 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.8□□□□□ -1.647e-9■□□□□ 8.1
YBX3P16989 EEF2-203ENST00000596417 218 ntTSL 212.53□□□□□ -0.41e-323■□□□□ 8.1
YBX3P16989 ZFR-204ENST00000505366 1159 ntTSL 1 (best)17.55■□□□□ 0.44e-10■□□□□ 8.1
YBX3P16989 ZFR-203ENST00000505204 552 ntTSL 416.4■□□□□ 0.224e-10■□□□□ 8.1
YBX3P16989 DLGAP5-201ENST00000247191 2973 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.914e-10■□□□□ 8.1
YBX3P16989 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.244e-10■□□□□ 8.1
YBX3P16989 G3BP1-207ENST00000520006 754 ntTSL 528.86■■■□□ 2.214e-10■□□□□ 8
YBX3P16989 G3BP1-212ENST00000522761 1763 ntTSL 220.92■□□□□ 0.944e-10■□□□□ 8
YBX3P16989 G3BP1-213ENST00000523519 535 ntTSL 420.67■□□□□ 0.94e-10■□□□□ 8
YBX3P16989 G3BP1-209ENST00000520578 530 ntTSL 318.47■□□□□ 0.554e-10■□□□□ 8
YBX3P16989 G3BP1-203ENST00000507878 577 ntTSL 415.98■□□□□ 0.154e-10■□□□□ 8
YBX3P16989 G3BP1-204ENST00000517947 558 ntTSL 415.57■□□□□ 0.084e-10■□□□□ 8
YBX3P16989 G3BP1-210ENST00000522367 580 ntTSL 315.57■□□□□ 0.084e-10■□□□□ 8
YBX3P16989 G3BP1-211ENST00000522666 783 ntTSL 315.19■□□□□ 0.024e-10■□□□□ 8
YBX3P16989 G3BP1-208ENST00000520177 2700 ntTSL 1 (best)15.04■□□□□ -04e-10■□□□□ 8
YBX3P16989 G3BP1-205ENST00000518726 869 ntTSL 1 (best)14.01□□□□□ -0.174e-10■□□□□ 8
YBX3P16989 G3BP1-206ENST00000519832 1173 ntTSL 1 (best)12.88□□□□□ -0.354e-10■□□□□ 8
YBX3P16989 G3BP1-201ENST00000356245 2803 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.364e-10■□□□□ 8
YBX3P16989 BUB1B-202ENST00000412359 3628 ntTSL 2 BASIC9.03□□□□□ -0.964e-10■□□□□ 8
YBX3P16989 BUB1B-201ENST00000287598 3725 ntAPPRIS P1 TSL 1 (best) BASIC8.93□□□□□ -0.984e-10■□□□□ 8
YBX3P16989 INTS7-205ENST00000460867 550 ntTSL 55.98□□□□□ -1.454e-10■□□□□ 8
YBX3P16989 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC1.89□□□□□ -2.114e-10■□□□□ 8
YBX3P16989 ATP6V1B2-203ENST00000520830 649 ntTSL 323.63■■□□□ 1.372e-11■□□□□ 8
YBX3P16989 PTPRS-207ENST00000589851 1270 ntTSL 520.45■□□□□ 0.862e-11■□□□□ 8
YBX3P16989 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC22.35■■□□□ 1.172e-11■□□□□ 8
YBX3P16989 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.912e-11■□□□□ 8
YBX3P16989 RHD-208ENST00000564398 1441 ntTSL 1 (best)19.3■□□□□ 0.682e-11■□□□□ 8
YBX3P16989 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC19.3■□□□□ 0.682e-11■□□□□ 8
YBX3P16989 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.86■□□□□ 0.612e-11■□□□□ 8
YBX3P16989 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC17.91■□□□□ 0.462e-11■□□□□ 8
YBX3P16989 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.342e-11■□□□□ 8
YBX3P16989 RHD-205ENST00000423253 951 ntTSL 515.92■□□□□ 0.142e-11■□□□□ 8
YBX3P16989 RHD-210ENST00000622561 3007 ntTSL 5 BASIC11.3□□□□□ -0.62e-11■□□□□ 8
YBX3P16989 RHD-201ENST00000328664 2930 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.62e-11■□□□□ 8
YBX3P16989 WDR45-213ENST00000465382 811 ntTSL 518.31■□□□□ 0.521e-12■□□□□ 8
YBX3P16989 WDR45-223ENST00000480412 437 ntTSL 218.1■□□□□ 0.491e-12■□□□□ 8
YBX3P16989 WDR45-221ENST00000475977 794 ntTSL 315.53■□□□□ 0.081e-12■□□□□ 8
YBX3P16989 KRT18-205ENST00000548496 695 ntTSL 215.34■□□□□ 0.051e-12■□□□□ 8
YBX3P16989 LDHB-205ENST00000470280 710 ntTSL 213.83□□□□□ -0.25e-38■□□□□ 8
YBX3P16989 CLTC-211ENST00000579815 609 ntTSL 57.05□□□□□ -1.286e-14■□□□□ 8
YBX3P16989 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.9■□□□□ 0.33e-15■□□□□ 8
YBX3P16989 WARS-238ENST00000557135 2080 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.613e-15■□□□□ 8
YBX3P16989 USP10-210ENST00000563892 570 ntTSL 322.46■■□□□ 1.192e-16■□□□□ 8
YBX3P16989 KPNB1-209ENST00000580158 603 ntTSL 29.06□□□□□ -0.965e-19■□□□□ 8
YBX3P16989 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC26.22■■□□□ 1.791e-6■□□□□ 8
YBX3P16989 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.731e-6■□□□□ 8
YBX3P16989 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.43■□□□□ 0.541e-6■□□□□ 8
YBX3P16989 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.23■□□□□ 0.511e-6■□□□□ 8
YBX3P16989 SCARB1-205ENST00000538291 5527 ntTSL 517.19■□□□□ 0.341e-6■□□□□ 8
YBX3P16989 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.33■□□□□ 0.21e-6■□□□□ 8
YBX3P16989 SCARB1-204ENST00000535005 1845 ntTSL 1 (best)14.92□□□□□ -0.021e-6■□□□□ 8
YBX3P16989 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.091e-6■□□□□ 8
Retrieved 75 of 29,075 protein–RNA pairs in 80.3 ms