Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
LSM1O15116 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LSM1O15116 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
LSM1O15116 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.15■■□□□ 1.14
LSM1O15116 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
LSM1O15116 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LSM1O15116 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
LSM1O15116 U85056.1-201ENST00000616429 682 ntBASIC22.15■■□□□ 1.14
LSM1O15116 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
LSM1O15116 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LSM1O15116 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
LSM1O15116 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
LSM1O15116 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC22.15■■□□□ 1.14
LSM1O15116 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.14■■□□□ 1.14
LSM1O15116 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC22.14■■□□□ 1.13
LSM1O15116 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
LSM1O15116 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.14■■□□□ 1.13
LSM1O15116 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
LSM1O15116 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LSM1O15116 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LSM1O15116 NFE2L3P1-201ENST00000588207 1959 ntBASIC22.13■■□□□ 1.13
LSM1O15116 LONRF2P2-201ENST00000439212 571 ntBASIC22.13■■□□□ 1.13
LSM1O15116 HSD17B1P1-201ENST00000590052 955 ntBASIC22.13■■□□□ 1.13
LSM1O15116 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
LSM1O15116 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
LSM1O15116 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
LSM1O15116 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LSM1O15116 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
LSM1O15116 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
LSM1O15116 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.12■■□□□ 1.13
LSM1O15116 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC22.12■■□□□ 1.13
LSM1O15116 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC22.12■■□□□ 1.13
LSM1O15116 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
LSM1O15116 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.12■■□□□ 1.13
LSM1O15116 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
LSM1O15116 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.12■■□□□ 1.13
LSM1O15116 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LSM1O15116 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
LSM1O15116 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC22.11■■□□□ 1.13
LSM1O15116 AC129492.7-201ENST00000622992 756 ntBASIC22.11■■□□□ 1.13
LSM1O15116 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LSM1O15116 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
LSM1O15116 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
LSM1O15116 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LSM1O15116 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LSM1O15116 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
LSM1O15116 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.1■■□□□ 1.13
LSM1O15116 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
LSM1O15116 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
LSM1O15116 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LSM1O15116 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
LSM1O15116 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
LSM1O15116 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
LSM1O15116 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
LSM1O15116 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
LSM1O15116 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
LSM1O15116 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
LSM1O15116 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
LSM1O15116 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC22.09■■□□□ 1.13
LSM1O15116 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
LSM1O15116 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
LSM1O15116 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC22.09■■□□□ 1.13
LSM1O15116 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
LSM1O15116 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC22.09■■□□□ 1.13
LSM1O15116 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC22.09■■□□□ 1.13
LSM1O15116 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
LSM1O15116 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
LSM1O15116 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
LSM1O15116 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.13
LSM1O15116 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
LSM1O15116 AL161729.1-201ENST00000604104 1402 ntBASIC22.08■■□□□ 1.13
LSM1O15116 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC22.08■■□□□ 1.13
LSM1O15116 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC22.08■■□□□ 1.13
LSM1O15116 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
LSM1O15116 KRT18P60-201ENST00000312876 1297 ntBASIC22.08■■□□□ 1.13
LSM1O15116 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC22.08■■□□□ 1.13
LSM1O15116 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC22.08■■□□□ 1.13
LSM1O15116 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.08■■□□□ 1.13
LSM1O15116 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC22.08■■□□□ 1.13
LSM1O15116 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.13
LSM1O15116 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.08■■□□□ 1.13
LSM1O15116 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.08■■□□□ 1.12
LSM1O15116 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
LSM1O15116 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.07■■□□□ 1.12
LSM1O15116 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
LSM1O15116 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
LSM1O15116 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC22.07■■□□□ 1.12
LSM1O15116 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
LSM1O15116 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
LSM1O15116 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
LSM1O15116 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
LSM1O15116 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
LSM1O15116 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
LSM1O15116 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LSM1O15116 C9orf163-202ENST00000624034 2573 ntBASIC22.06■■□□□ 1.12
LSM1O15116 EI24-213ENST00000618552 1747 ntTSL 5 BASIC22.06■■□□□ 1.12
LSM1O15116 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
LSM1O15116 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.06■■□□□ 1.12
LSM1O15116 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.06■■□□□ 1.12
LSM1O15116 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms