Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
CX3CL1P78423 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CX3CL1P78423 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CX3CL1P78423 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CX3CL1P78423 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CX3CL1P78423 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC18.53■□□□□ 0.56
CX3CL1P78423 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CX3CL1P78423 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
CX3CL1P78423 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CX3CL1P78423 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC18.53■□□□□ 0.56
CX3CL1P78423 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.53■□□□□ 0.56
CX3CL1P78423 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CX3CL1P78423 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CX3CL1P78423 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CX3CL1P78423 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
CX3CL1P78423 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.52■□□□□ 0.56
CX3CL1P78423 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.52■□□□□ 0.56
CX3CL1P78423 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CX3CL1P78423 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CX3CL1P78423 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
CX3CL1P78423 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC18.52■□□□□ 0.55
CX3CL1P78423 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CX3CL1P78423 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC18.52■□□□□ 0.55
CX3CL1P78423 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CX3CL1P78423 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.52■□□□□ 0.55
CX3CL1P78423 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
CX3CL1P78423 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC18.51■□□□□ 0.55
CX3CL1P78423 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CX3CL1P78423 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CX3CL1P78423 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CX3CL1P78423 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CX3CL1P78423 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CX3CL1P78423 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CX3CL1P78423 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.51■□□□□ 0.55
CX3CL1P78423 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.51■□□□□ 0.55
CX3CL1P78423 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CX3CL1P78423 MIR4508-201ENST00000584178 70 ntBASIC18.51■□□□□ 0.55
CX3CL1P78423 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC18.51■□□□□ 0.55
CX3CL1P78423 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CX3CL1P78423 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC18.51■□□□□ 0.55
CX3CL1P78423 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CX3CL1P78423 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CX3CL1P78423 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CX3CL1P78423 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.51■□□□□ 0.55
CX3CL1P78423 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CX3CL1P78423 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CX3CL1P78423 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CX3CL1P78423 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CX3CL1P78423 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.5■□□□□ 0.55
CX3CL1P78423 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC18.5■□□□□ 0.55
CX3CL1P78423 KRT8P33-201ENST00000508125 1423 ntBASIC18.5■□□□□ 0.55
CX3CL1P78423 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CX3CL1P78423 AL139125.2-201ENST00000623134 1869 ntBASIC18.5■□□□□ 0.55
CX3CL1P78423 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.5■□□□□ 0.55
CX3CL1P78423 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CX3CL1P78423 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CX3CL1P78423 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CX3CL1P78423 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CX3CL1P78423 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CX3CL1P78423 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CX3CL1P78423 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CX3CL1P78423 YBX1P4-201ENST00000392794 808 ntBASIC18.49■□□□□ 0.55
CX3CL1P78423 AC103834.1-201ENST00000520383 144 ntBASIC18.49■□□□□ 0.55
CX3CL1P78423 AC011551.1-201ENST00000614101 683 ntBASIC18.49■□□□□ 0.55
CX3CL1P78423 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC18.49■□□□□ 0.55
CX3CL1P78423 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CX3CL1P78423 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC18.49■□□□□ 0.55
CX3CL1P78423 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CX3CL1P78423 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.49■□□□□ 0.55
CX3CL1P78423 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC18.49■□□□□ 0.55
CX3CL1P78423 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC18.49■□□□□ 0.55
CX3CL1P78423 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
CX3CL1P78423 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CX3CL1P78423 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC18.48■□□□□ 0.55
CX3CL1P78423 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CX3CL1P78423 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.48■□□□□ 0.55
CX3CL1P78423 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CX3CL1P78423 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
CX3CL1P78423 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CX3CL1P78423 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
CX3CL1P78423 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC18.47■□□□□ 0.55
CX3CL1P78423 AC120024.1-201ENST00000562672 995 ntBASIC18.47■□□□□ 0.55
CX3CL1P78423 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.47■□□□□ 0.55
CX3CL1P78423 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CX3CL1P78423 LINC00543-201ENST00000567234 1845 ntBASIC18.46■□□□□ 0.55
CX3CL1P78423 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CX3CL1P78423 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CX3CL1P78423 HLA-L-211ENST00000482052 1765 ntBASIC18.46■□□□□ 0.55
CX3CL1P78423 KRT18P24-201ENST00000344739 1156 ntBASIC18.46■□□□□ 0.55
CX3CL1P78423 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CX3CL1P78423 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CX3CL1P78423 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.46■□□□□ 0.55
CX3CL1P78423 THA1P-201ENST00000590384 1145 ntBASIC18.46■□□□□ 0.55
CX3CL1P78423 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CX3CL1P78423 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CX3CL1P78423 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CX3CL1P78423 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CX3CL1P78423 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC18.46■□□□□ 0.55
CX3CL1P78423 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.46■□□□□ 0.54
CX3CL1P78423 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms