Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.31■■□□□ 1
SNRNP40Q96DI7 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.3■■□□□ 1
SNRNP40Q96DI7 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.3■■□□□ 1
SNRNP40Q96DI7 RARRES2P6-201ENST00000567333 442 ntBASIC21.3■■□□□ 1
SNRNP40Q96DI7 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.3■■□□□ 1
SNRNP40Q96DI7 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.3■■□□□ 1
SNRNP40Q96DI7 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SNRNP40Q96DI7 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.29■■□□□ 1
SNRNP40Q96DI7 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SNRNP40Q96DI7 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SNRNP40Q96DI7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.29■■□□□ 1
SNRNP40Q96DI7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.29■■□□□ 1
SNRNP40Q96DI7 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.29■■□□□ 1
SNRNP40Q96DI7 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SNRNP40Q96DI7 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SNRNP40Q96DI7 FOXO3B-201ENST00000395675 1928 ntBASIC21.28■■□□□ 1
SNRNP40Q96DI7 UNC93B3-201ENST00000308076 687 ntBASIC21.28■■□□□ 1
SNRNP40Q96DI7 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
SNRNP40Q96DI7 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.28■■□□□ 1
SNRNP40Q96DI7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.28■■□□□ 1
SNRNP40Q96DI7 AC092666.2-201ENST00000613287 246 ntBASIC21.28■■□□□ 1
SNRNP40Q96DI7 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.28■■□□□ 1
SNRNP40Q96DI7 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
SNRNP40Q96DI7 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SNRNP40Q96DI7 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.27■■□□□ 1
SNRNP40Q96DI7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.27■■□□□ 1
SNRNP40Q96DI7 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
SNRNP40Q96DI7 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNRNP40Q96DI7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.26■□□□□ 0.99
SNRNP40Q96DI7 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNRNP40Q96DI7 MIR6722-201ENST00000617286 78 ntBASIC21.26■□□□□ 0.99
SNRNP40Q96DI7 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SNRNP40Q96DI7 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SNRNP40Q96DI7 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SNRNP40Q96DI7 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SNRNP40Q96DI7 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC21.25■□□□□ 0.99
SNRNP40Q96DI7 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
SNRNP40Q96DI7 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SNRNP40Q96DI7 SNX5-217ENST00000606557 1087 ntBASIC21.25■□□□□ 0.99
SNRNP40Q96DI7 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.25■□□□□ 0.99
SNRNP40Q96DI7 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
SNRNP40Q96DI7 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SNRNP40Q96DI7 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 AL136162.1-201ENST00000607711 1078 ntBASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
SNRNP40Q96DI7 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
SNRNP40Q96DI7 SUDS3P1-201ENST00000505831 966 ntBASIC21.23■□□□□ 0.99
SNRNP40Q96DI7 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.23■□□□□ 0.99
SNRNP40Q96DI7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SNRNP40Q96DI7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC21.23■□□□□ 0.99
SNRNP40Q96DI7 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SNRNP40Q96DI7 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.23■□□□□ 0.99
SNRNP40Q96DI7 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SNRNP40Q96DI7 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SNRNP40Q96DI7 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNRNP40Q96DI7 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNRNP40Q96DI7 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
SNRNP40Q96DI7 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.22■□□□□ 0.99
SNRNP40Q96DI7 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC21.22■□□□□ 0.99
SNRNP40Q96DI7 AL031432.3-201ENST00000607698 485 ntBASIC21.22■□□□□ 0.99
SNRNP40Q96DI7 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC21.22■□□□□ 0.99
SNRNP40Q96DI7 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SNRNP40Q96DI7 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SNRNP40Q96DI7 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNRNP40Q96DI7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SNRNP40Q96DI7 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SNRNP40Q96DI7 AC026271.2-201ENST00000428091 497 ntBASIC21.21■□□□□ 0.99
SNRNP40Q96DI7 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.21■□□□□ 0.99
SNRNP40Q96DI7 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.21■□□□□ 0.99
SNRNP40Q96DI7 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
SNRNP40Q96DI7 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SNRNP40Q96DI7 AC135279.3-201ENST00000610945 1311 ntBASIC21.21■□□□□ 0.99
SNRNP40Q96DI7 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SNRNP40Q96DI7 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SNRNP40Q96DI7 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNRNP40Q96DI7 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.2■□□□□ 0.98
SNRNP40Q96DI7 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SNRNP40Q96DI7 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SNRNP40Q96DI7 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNRNP40Q96DI7 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNRNP40Q96DI7 AC090877.2-201ENST00000558441 1738 ntBASIC21.19■□□□□ 0.98
SNRNP40Q96DI7 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SNRNP40Q96DI7 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.19■□□□□ 0.98
SNRNP40Q96DI7 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNRNP40Q96DI7 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SNRNP40Q96DI7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
SNRNP40Q96DI7 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SNRNP40Q96DI7 SRD5A1P1-201ENST00000442297 786 ntBASIC21.18■□□□□ 0.98
SNRNP40Q96DI7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.18■□□□□ 0.98
SNRNP40Q96DI7 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 12.2 ms