Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 YCL041CYCL041C 495 nt5.04□□□□□ -1.6
CUP9P41817 CLB2YPR119W 1476 nt5.04□□□□□ -1.6
CUP9P41817 RMD9YGL107C 1941 nt5.03□□□□□ -1.6
CUP9P41817 BUL1YMR275C 2931 nt5.03□□□□□ -1.6
CUP9P41817 ERG3YLR056W 1098 nt5.03□□□□□ -1.6
CUP9P41817 PGA3YML125C 939 nt5.03□□□□□ -1.6
CUP9P41817 YOL097W-AYOL097W-A 186 nt5.03□□□□□ -1.6
CUP9P41817 SAC6YDR129C 1929 nt5.03□□□□□ -1.6
CUP9P41817 YFR006WYFR006W 1608 nt5.02□□□□□ -1.61
CUP9P41817 tN(GUU)CtN(GUU)C 74 nt5.02□□□□□ -1.61
CUP9P41817 tN(GUU)FtN(GUU)F 74 nt5.02□□□□□ -1.61
CUP9P41817 tN(GUU)GtN(GUU)G 74 nt5.02□□□□□ -1.61
CUP9P41817 tN(GUU)KtN(GUU)K 74 nt5.02□□□□□ -1.61
CUP9P41817 tN(GUU)LtN(GUU)L 74 nt5.02□□□□□ -1.61
CUP9P41817 tN(GUU)N1tN(GUU)N1 74 nt5.02□□□□□ -1.61
CUP9P41817 tN(GUU)N2tN(GUU)N2 74 nt5.02□□□□□ -1.61
CUP9P41817 tN(GUU)O1tN(GUU)O1 74 nt5.02□□□□□ -1.61
CUP9P41817 tN(GUU)O2tN(GUU)O2 74 nt5.02□□□□□ -1.61
CUP9P41817 tN(GUU)PtN(GUU)P 74 nt5.02□□□□□ -1.61
CUP9P41817 PRM10YJL108C 1152 nt5.02□□□□□ -1.61
CUP9P41817 CLB1YGR108W 1416 nt5.02□□□□□ -1.61
CUP9P41817 TRK2YKR050W 2670 nt5.02□□□□□ -1.61
CUP9P41817 GAA1YLR088W 1845 nt5.02□□□□□ -1.61
CUP9P41817 KEX2YNL238W 2445 nt5.02□□□□□ -1.61
CUP9P41817 YDL034WYDL034W 345 nt5.01□□□□□ -1.61
CUP9P41817 MHR1YDR296W 681 nt5.01□□□□□ -1.61
CUP9P41817 SLO1YER180C-A 258 nt5.01□□□□□ -1.61
CUP9P41817 YGL194C-AYGL194C-A 243 nt5.01□□□□□ -1.61
CUP9P41817 SMF2YHR050W 1650 nt5.01□□□□□ -1.61
CUP9P41817 YJR015WYJR015W 1533 nt5.01□□□□□ -1.61
CUP9P41817 EMW1YNL313C 2715 nt5□□□□□ -1.61
CUP9P41817 COS9YKL219W 1224 nt5□□□□□ -1.61
CUP9P41817 CBC2YPL178W 627 nt5□□□□□ -1.61
CUP9P41817 NOB1YOR056C 1380 nt5□□□□□ -1.61
CUP9P41817 ATF1YOR377W 1578 nt4.99□□□□□ -1.61
CUP9P41817 TRP5YGL026C 2124 nt4.99□□□□□ -1.61
CUP9P41817 UGO1YDR470C 1509 nt4.99□□□□□ -1.61
CUP9P41817 HAS1YMR290C 1518 nt4.99□□□□□ -1.61
CUP9P41817 FZF1YGL254W 900 nt4.99□□□□□ -1.61
CUP9P41817 SSO1YPL232W 873 nt4.99□□□□□ -1.61
CUP9P41817 NHP6BYBR089C-A 300 nt4.99□□□□□ -1.61
CUP9P41817 SHE10YGL228W 1734 nt4.99□□□□□ -1.61
CUP9P41817 GUA1YMR217W 1578 nt4.99□□□□□ -1.61
CUP9P41817 ALT1YLR089C 1779 nt4.99□□□□□ -1.61
CUP9P41817 PKC1YBL105C 3456 nt4.98□□□□□ -1.61
CUP9P41817 PRO3YER023W 861 nt4.98□□□□□ -1.61
CUP9P41817 RPT6YGL048C 1218 nt4.98□□□□□ -1.61
CUP9P41817 SKN1YGR143W 2316 nt4.98□□□□□ -1.61
CUP9P41817 MID1YNL291C 1647 nt4.97□□□□□ -1.61
CUP9P41817 PCS60YBR222C 1632 nt4.97□□□□□ -1.61
CUP9P41817 STL1YDR536W 1710 nt4.97□□□□□ -1.61
CUP9P41817 MMP1YLL061W 1752 nt4.97□□□□□ -1.61
CUP9P41817 YPL062WYPL062W 405 nt4.97□□□□□ -1.61
CUP9P41817 SAM4YPL273W 978 nt4.97□□□□□ -1.61
CUP9P41817 MTC5YDR128W 3447 nt4.97□□□□□ -1.61
CUP9P41817 YEH1YLL012W 1722 nt4.97□□□□□ -1.61
CUP9P41817 GFA1YKL104C 2154 nt4.97□□□□□ -1.61
CUP9P41817 LSG1YGL099W 1923 nt4.96□□□□□ -1.62
CUP9P41817 GET3YDL100C 1065 nt4.96□□□□□ -1.62
CUP9P41817 RPS15YOL040C 429 nt4.96□□□□□ -1.62
CUP9P41817 YOL131WYOL131W 327 nt4.96□□□□□ -1.62
CUP9P41817 YOR318CYOR318C 306 nt4.96□□□□□ -1.62
CUP9P41817 KTR3YBR205W 1215 nt4.96□□□□□ -1.62
CUP9P41817 ATP1YBL099W 1638 nt4.95□□□□□ -1.62
CUP9P41817 HSP150YJL159W 1242 nt4.95□□□□□ -1.62
CUP9P41817 GFD1YMR255W 567 nt4.95□□□□□ -1.62
CUP9P41817 AMA1YGR225W 1782 nt4.95□□□□□ -1.62
CUP9P41817 NSE5YML023C 1671 nt4.95□□□□□ -1.62
CUP9P41817 SUB2YDL084W 1341 nt4.95□□□□□ -1.62
CUP9P41817 SNT2YGL131C 4212 nt4.94□□□□□ -1.62
CUP9P41817 PTK2YJR059W 2457 nt4.94□□□□□ -1.62
CUP9P41817 CWC27YPL064C 906 nt4.94□□□□□ -1.62
CUP9P41817 RPT1YKL145W 1404 nt4.94□□□□□ -1.62
CUP9P41817 TEL2YGR099W 2067 nt4.93□□□□□ -1.62
CUP9P41817 TEF1YPR080W 1377 nt4.93□□□□□ -1.62
CUP9P41817 TEF2YBR118W 1377 nt4.93□□□□□ -1.62
CUP9P41817 EHD3YDR036C 1503 nt4.93□□□□□ -1.62
CUP9P41817 GEP3YOR205C 1671 nt4.93□□□□□ -1.62
CUP9P41817 NDC1YML031W 1968 nt4.93□□□□□ -1.62
CUP9P41817 YNR048WYNR048W 1182 nt4.93□□□□□ -1.62
CUP9P41817 ATP4YPL078C 735 nt4.93□□□□□ -1.62
CUP9P41817 BZZ1YHR114W 1902 nt4.93□□□□□ -1.62
CUP9P41817 TOS4YLR183C 1470 nt4.93□□□□□ -1.62
CUP9P41817 PHO8YDR481C 1701 nt4.92□□□□□ -1.62
CUP9P41817 MSS1YMR023C 1581 nt4.92□□□□□ -1.62
CUP9P41817 QDR3YBR043C 2070 nt4.92□□□□□ -1.62
CUP9P41817 IDP1YDL066W 1287 nt4.92□□□□□ -1.62
CUP9P41817 SFC1YJR095W 969 nt4.92□□□□□ -1.62
CUP9P41817 YLR283WYLR283W 945 nt4.92□□□□□ -1.62
CUP9P41817 UBC4YBR082C 447 nt4.92□□□□□ -1.62
CUP9P41817 YPR195CYPR195C 330 nt4.92□□□□□ -1.62
CUP9P41817 UTP7YER082C 1665 nt4.92□□□□□ -1.62
CUP9P41817 STE13YOR219C 2796 nt4.92□□□□□ -1.62
CUP9P41817 YHR127WYHR127W 732 nt4.91□□□□□ -1.62
CUP9P41817 POM33YLL023C 840 nt4.91□□□□□ -1.62
CUP9P41817 DPH2YKL191W 1605 nt4.9□□□□□ -1.62
CUP9P41817 DUG1YFR044C 1446 nt4.9□□□□□ -1.62
CUP9P41817 CHO1YER026C 831 nt4.9□□□□□ -1.63
CUP9P41817 SCW4YGR279C 1161 nt4.9□□□□□ -1.63
CUP9P41817 MRP51YPL118W 1035 nt4.9□□□□□ -1.63
Retrieved 100 of 7,029 protein–RNA pairs in 51 ms