Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
SHROOM3Q8TF72 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SHROOM3Q8TF72 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC24.48■■□□□ 1.51
SHROOM3Q8TF72 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SHROOM3Q8TF72 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
SHROOM3Q8TF72 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
SHROOM3Q8TF72 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
SHROOM3Q8TF72 AL592295.1-201ENST00000400984 884 ntBASIC24.47■■□□□ 1.51
SHROOM3Q8TF72 RARRES2P1-201ENST00000474487 481 ntBASIC24.47■■□□□ 1.51
SHROOM3Q8TF72 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
SHROOM3Q8TF72 SNAI3-AS1-204ENST00000567997 2048 ntBASIC24.47■■□□□ 1.51
SHROOM3Q8TF72 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
SHROOM3Q8TF72 U85056.1-201ENST00000616429 682 ntBASIC24.47■■□□□ 1.51
SHROOM3Q8TF72 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
SHROOM3Q8TF72 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
SHROOM3Q8TF72 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
SHROOM3Q8TF72 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
SHROOM3Q8TF72 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
SHROOM3Q8TF72 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
SHROOM3Q8TF72 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.51
SHROOM3Q8TF72 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
SHROOM3Q8TF72 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
SHROOM3Q8TF72 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
SHROOM3Q8TF72 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
SHROOM3Q8TF72 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC24.45■■□□□ 1.5
SHROOM3Q8TF72 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC24.44■■□□□ 1.5
SHROOM3Q8TF72 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
SHROOM3Q8TF72 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC24.44■■□□□ 1.5
SHROOM3Q8TF72 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
SHROOM3Q8TF72 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC24.44■■□□□ 1.5
SHROOM3Q8TF72 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SHROOM3Q8TF72 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SHROOM3Q8TF72 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
SHROOM3Q8TF72 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC24.44■■□□□ 1.5
SHROOM3Q8TF72 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC24.43■■□□□ 1.5
SHROOM3Q8TF72 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC24.43■■□□□ 1.5
SHROOM3Q8TF72 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SHROOM3Q8TF72 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SHROOM3Q8TF72 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
SHROOM3Q8TF72 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC24.43■■□□□ 1.5
SHROOM3Q8TF72 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SHROOM3Q8TF72 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
SHROOM3Q8TF72 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
SHROOM3Q8TF72 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC24.42■■□□□ 1.5
SHROOM3Q8TF72 MTURN-203ENST00000409688 843 ntTSL 2 BASIC24.42■■□□□ 1.5
SHROOM3Q8TF72 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC24.42■■□□□ 1.5
SHROOM3Q8TF72 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC24.42■■□□□ 1.5
SHROOM3Q8TF72 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC24.42■■□□□ 1.5
SHROOM3Q8TF72 AC129492.7-201ENST00000622992 756 ntBASIC24.42■■□□□ 1.5
SHROOM3Q8TF72 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SHROOM3Q8TF72 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
SHROOM3Q8TF72 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
SHROOM3Q8TF72 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
SHROOM3Q8TF72 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC24.41■■□□□ 1.5
SHROOM3Q8TF72 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SHROOM3Q8TF72 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SHROOM3Q8TF72 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SHROOM3Q8TF72 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC24.4■■□□□ 1.5
SHROOM3Q8TF72 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SHROOM3Q8TF72 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
SHROOM3Q8TF72 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC24.4■■□□□ 1.5
SHROOM3Q8TF72 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
SHROOM3Q8TF72 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
SHROOM3Q8TF72 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC24.39■■□□□ 1.49
SHROOM3Q8TF72 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
SHROOM3Q8TF72 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.38■■□□□ 1.49
SHROOM3Q8TF72 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC24.38■■□□□ 1.49
SHROOM3Q8TF72 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
SHROOM3Q8TF72 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC24.38■■□□□ 1.49
SHROOM3Q8TF72 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
SHROOM3Q8TF72 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC24.38■■□□□ 1.49
SHROOM3Q8TF72 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC24.38■■□□□ 1.49
SHROOM3Q8TF72 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
SHROOM3Q8TF72 TSPY13P-201ENST00000338964 914 ntBASIC24.37■■□□□ 1.49
SHROOM3Q8TF72 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
SHROOM3Q8TF72 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
SHROOM3Q8TF72 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC24.35■■□□□ 1.49
SHROOM3Q8TF72 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SHROOM3Q8TF72 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SHROOM3Q8TF72 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SHROOM3Q8TF72 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
SHROOM3Q8TF72 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SHROOM3Q8TF72 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC24.35■■□□□ 1.49
SHROOM3Q8TF72 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SHROOM3Q8TF72 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
SHROOM3Q8TF72 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC24.35■■□□□ 1.49
SHROOM3Q8TF72 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
SHROOM3Q8TF72 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC24.34■■□□□ 1.49
SHROOM3Q8TF72 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC24.34■■□□□ 1.49
SHROOM3Q8TF72 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC24.34■■□□□ 1.49
SHROOM3Q8TF72 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC24.34■■□□□ 1.49
SHROOM3Q8TF72 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
SHROOM3Q8TF72 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.49
SHROOM3Q8TF72 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SHROOM3Q8TF72 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC24.33■■□□□ 1.49
SHROOM3Q8TF72 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC24.33■■□□□ 1.49
SHROOM3Q8TF72 MIR6765-201ENST00000614092 87 ntBASIC24.33■■□□□ 1.49
SHROOM3Q8TF72 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC24.33■■□□□ 1.49
SHROOM3Q8TF72 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC24.33■■□□□ 1.49
SHROOM3Q8TF72 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 89.2 ms