Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
LIMS3P0CW19 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
LIMS3P0CW19 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LIMS3P0CW19 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
LIMS3P0CW19 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.22■□□□□ 0.99
LIMS3P0CW19 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.22■□□□□ 0.99
LIMS3P0CW19 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 AC008813.1-201ENST00000536597 885 ntBASIC21.22■□□□□ 0.99
LIMS3P0CW19 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.22■□□□□ 0.99
LIMS3P0CW19 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 AC068473.5-201ENST00000616428 2072 ntBASIC21.2■□□□□ 0.99
LIMS3P0CW19 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
LIMS3P0CW19 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMS3P0CW19 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
LIMS3P0CW19 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMS3P0CW19 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
LIMS3P0CW19 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
LIMS3P0CW19 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.18■□□□□ 0.98
LIMS3P0CW19 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMS3P0CW19 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMS3P0CW19 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMS3P0CW19 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.17■□□□□ 0.98
LIMS3P0CW19 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.17■□□□□ 0.98
LIMS3P0CW19 AC141586.4-201ENST00000624558 1573 ntBASIC21.17■□□□□ 0.98
LIMS3P0CW19 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMS3P0CW19 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMS3P0CW19 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.17■□□□□ 0.98
LIMS3P0CW19 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMS3P0CW19 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
LIMS3P0CW19 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMS3P0CW19 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.16■□□□□ 0.98
LIMS3P0CW19 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMS3P0CW19 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMS3P0CW19 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMS3P0CW19 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMS3P0CW19 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L13-201ENST00000554103 1267 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L15-201ENST00000611059 1267 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L23-201ENST00000615195 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L24-201ENST00000617576 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 LINC01971-201ENST00000617888 1048 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L22-201ENST00000618238 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L20-201ENST00000619712 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L21-201ENST00000622058 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L10-201ENST00000622460 1267 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L25-201ENST00000624915 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMS3P0CW19 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMS3P0CW19 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LIMS3P0CW19 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMS3P0CW19 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMS3P0CW19 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.15■□□□□ 0.98
LIMS3P0CW19 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMS3P0CW19 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMS3P0CW19 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LIMS3P0CW19 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
LIMS3P0CW19 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.97
LIMS3P0CW19 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.14■□□□□ 0.97
LIMS3P0CW19 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIMS3P0CW19 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIMS3P0CW19 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIMS3P0CW19 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.13■□□□□ 0.97
LIMS3P0CW19 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms