Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 YPR114WYPR114W 948 nt6.65□□□□□ -1.34
SHP1P34223 PUF3YLL013C 2640 nt6.65□□□□□ -1.34
SHP1P34223 RAD24YER173W 1980 nt6.64□□□□□ -1.35
SHP1P34223 COX5AYNL052W 462 nt6.64□□□□□ -1.35
SHP1P34223 SRF1YDL133W 1314 nt6.63□□□□□ -1.35
SHP1P34223 YEL009C-AYEL009C-A 408 nt6.63□□□□□ -1.35
SHP1P34223 AIM33YML087C 939 nt6.63□□□□□ -1.35
SHP1P34223 HDA1YNL021W 2121 nt6.63□□□□□ -1.35
SHP1P34223 AAD15YOL165C 432 nt6.63□□□□□ -1.35
SHP1P34223 NTE1YML059C 5040 nt6.63□□□□□ -1.35
SHP1P34223 ICL2YPR006C 1728 nt6.62□□□□□ -1.35
SHP1P34223 PHB1YGR132C 864 nt6.62□□□□□ -1.35
SHP1P34223 AFG1YEL052W 1530 nt6.61□□□□□ -1.35
SHP1P34223 HSM3YBR272C 1443 nt6.61□□□□□ -1.35
SHP1P34223 RSC30YHR056C 2652 nt6.61□□□□□ -1.35
SHP1P34223 TRR1YDR353W 960 nt6.61□□□□□ -1.35
SHP1P34223 tR(ACG)DtR(ACG)D 73 nt6.61□□□□□ -1.35
SHP1P34223 tR(ACG)EtR(ACG)E 73 nt6.61□□□□□ -1.35
SHP1P34223 tR(ACG)KtR(ACG)K 73 nt6.61□□□□□ -1.35
SHP1P34223 tR(ACG)LtR(ACG)L 73 nt6.61□□□□□ -1.35
SHP1P34223 tR(ACG)OtR(ACG)O 73 nt6.61□□□□□ -1.35
SHP1P34223 YHR070C-AYHR070C-A 411 nt6.61□□□□□ -1.35
SHP1P34223 RMA1YKL132C 1293 nt6.61□□□□□ -1.35
SHP1P34223 UBC11YOR339C 471 nt6.61□□□□□ -1.35
SHP1P34223 AGP2YBR132C 1791 nt6.61□□□□□ -1.35
SHP1P34223 PGM1YKL127W 1713 nt6.6□□□□□ -1.35
SHP1P34223 YIR042CYIR042C 711 nt6.6□□□□□ -1.35
SHP1P34223 MRP17YKL003C 396 nt6.6□□□□□ -1.35
SHP1P34223 YMR119W-AYMR119W-A 375 nt6.6□□□□□ -1.35
SHP1P34223 RPL21AYBR191W 483 nt6.6□□□□□ -1.35
SHP1P34223 GUD1YDL238C 1470 nt6.6□□□□□ -1.35
SHP1P34223 FHN1YGR131W 525 nt6.59□□□□□ -1.35
SHP1P34223 MRPL22YNL177C 930 nt6.59□□□□□ -1.35
SHP1P34223 VTS1YOR359W 1572 nt6.59□□□□□ -1.35
SHP1P34223 HAP3YBL021C 435 nt6.58□□□□□ -1.36
SHP1P34223 DAP1YPL170W 459 nt6.58□□□□□ -1.36
SHP1P34223 ACO1YLR304C 2337 nt6.58□□□□□ -1.36
SHP1P34223 SES1YDR023W 1389 nt6.57□□□□□ -1.36
SHP1P34223 QCR6YFR033C 444 nt6.57□□□□□ -1.36
SHP1P34223 CBP4YGR174C 513 nt6.57□□□□□ -1.36
SHP1P34223 BRL1YHR036W 1416 nt6.57□□□□□ -1.36
SHP1P34223 PPS1YBR276C 2424 nt6.56□□□□□ -1.36
SHP1P34223 ADY2YCR010C 852 nt6.56□□□□□ -1.36
SHP1P34223 EFM4YIL064W 774 nt6.56□□□□□ -1.36
SHP1P34223 GON7YJL184W 372 nt6.56□□□□□ -1.36
SHP1P34223 ATG4YNL223W 1485 nt6.55□□□□□ -1.36
SHP1P34223 MDH3YDL078C 1032 nt6.55□□□□□ -1.36
SHP1P34223 GTT3YEL017W 1014 nt6.55□□□□□ -1.36
SHP1P34223 YGR068W-AYGR068W-A 96 nt6.55□□□□□ -1.36
SHP1P34223 COA1YIL157C 594 nt6.55□□□□□ -1.36
SHP1P34223 PRP2YNR011C 2631 nt6.54□□□□□ -1.36
SHP1P34223 YGR022CYGR022C 330 nt6.54□□□□□ -1.36
SHP1P34223 CCP1YKR066C 1086 nt6.54□□□□□ -1.36
SHP1P34223 YHM2YMR241W 945 nt6.54□□□□□ -1.36
SHP1P34223 YNR075C-AYNR075C-A 93 nt6.54□□□□□ -1.36
SHP1P34223 YOR389WYOR389W 1875 nt6.53□□□□□ -1.36
SHP1P34223 DCN1YLR128W 810 nt6.53□□□□□ -1.36
SHP1P34223 LST8YNL006W 912 nt6.53□□□□□ -1.36
SHP1P34223 BSC4YNL269W 396 nt6.53□□□□□ -1.36
SHP1P34223 YPL277CYPL277C 1464 nt6.53□□□□□ -1.36
SHP1P34223 ARG81YML099C 2643 nt6.52□□□□□ -1.37
SHP1P34223 DMA1YHR115C 1251 nt6.52□□□□□ -1.37
SHP1P34223 YNL165WYNL165W 1221 nt6.52□□□□□ -1.37
SHP1P34223 YBR144CYBR144C 315 nt6.52□□□□□ -1.37
SHP1P34223 KKQ8YKL168C 2175 nt6.51□□□□□ -1.37
SHP1P34223 YDR278CYDR278C 318 nt6.51□□□□□ -1.37
SHP1P34223 LCP5YER127W 1074 nt6.51□□□□□ -1.37
SHP1P34223 BCY1YIL033C 1251 nt6.51□□□□□ -1.37
SHP1P34223 CRP1YHR146W 1398 nt6.51□□□□□ -1.37
SHP1P34223 YML133CYML133C 4125 nt6.51□□□□□ -1.37
SHP1P34223 YCR047W-AYCR047W-A 207 nt6.5□□□□□ -1.37
SHP1P34223 HSP12YFL014W 330 nt6.5□□□□□ -1.37
SHP1P34223 YGL235WYGL235W 537 nt6.5□□□□□ -1.37
SHP1P34223 ARG1YOL058W 1263 nt6.5□□□□□ -1.37
SHP1P34223 RPS9AYPL081W 594 nt6.5□□□□□ -1.37
SHP1P34223 MAK32YCR019W 1092 nt6.49□□□□□ -1.37
SHP1P34223 RRP4YHR069C 1080 nt6.49□□□□□ -1.37
SHP1P34223 YKL031WYKL031W 414 nt6.49□□□□□ -1.37
SHP1P34223 SGE1YPR198W 1632 nt6.48□□□□□ -1.37
SHP1P34223 SYN8YAL014C 768 nt6.48□□□□□ -1.37
SHP1P34223 ARR3YPR201W 1215 nt6.48□□□□□ -1.37
SHP1P34223 BDF2YDL070W 1917 nt6.48□□□□□ -1.37
SHP1P34223 IME2YJL106W 1938 nt6.48□□□□□ -1.37
SHP1P34223 RQC1YDR333C 2172 nt6.48□□□□□ -1.37
SHP1P34223 ERG12YMR208W 1332 nt6.48□□□□□ -1.37
SHP1P34223 CNE1YAL058W 1509 nt6.47□□□□□ -1.37
SHP1P34223 YDR109CYDR109C 2148 nt6.47□□□□□ -1.37
SHP1P34223 APE3YBR286W 1614 nt6.47□□□□□ -1.37
SHP1P34223 NMD5YJR132W 3147 nt6.46□□□□□ -1.37
SHP1P34223 ECM38YLR299W 1983 nt6.46□□□□□ -1.37
SHP1P34223 SGV1YPR161C 1974 nt6.46□□□□□ -1.37
SHP1P34223 VPS61YDR136C 573 nt6.46□□□□□ -1.38
SHP1P34223 GAT4YIR013C 366 nt6.46□□□□□ -1.38
SHP1P34223 DAL3YIR032C 588 nt6.46□□□□□ -1.38
SHP1P34223 YLR194CYLR194C 765 nt6.46□□□□□ -1.38
SHP1P34223 REC114YMR133W 1287 nt6.46□□□□□ -1.38
SHP1P34223 CIR2YOR356W 1896 nt6.45□□□□□ -1.38
SHP1P34223 PAN6YIL145C 930 nt6.45□□□□□ -1.38
SHP1P34223 YDL114WYDL114W 927 nt6.44□□□□□ -1.38
SHP1P34223 DPH5YLR172C 903 nt6.44□□□□□ -1.38
Retrieved 100 of 7,029 protein–RNA pairs in 64.9 ms