Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.73■□□□□ 0.43
LSM1O15116 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.73■□□□□ 0.43
LSM1O15116 AC098590.1-201ENST00000468126 897 ntBASIC17.73■□□□□ 0.43
LSM1O15116 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 AC097488.1-201ENST00000507834 756 ntBASIC17.73■□□□□ 0.43
LSM1O15116 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.73■□□□□ 0.43
LSM1O15116 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.73■□□□□ 0.43
LSM1O15116 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
LSM1O15116 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.73■□□□□ 0.43
LSM1O15116 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.73■□□□□ 0.43
LSM1O15116 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LSM1O15116 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LSM1O15116 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LSM1O15116 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.72■□□□□ 0.43
LSM1O15116 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.72■□□□□ 0.43
LSM1O15116 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LSM1O15116 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.72■□□□□ 0.43
LSM1O15116 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
LSM1O15116 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 RPS2P55-201ENST00000397318 883 ntBASIC17.72■□□□□ 0.43
LSM1O15116 SLC25A6P5-201ENST00000435663 894 ntBASIC17.72■□□□□ 0.43
LSM1O15116 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 AC107956.1-201ENST00000494359 873 ntBASIC17.72■□□□□ 0.43
LSM1O15116 AC142381.4-202ENST00000563973 229 ntBASIC17.72■□□□□ 0.43
LSM1O15116 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.72■□□□□ 0.43
LSM1O15116 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.72■□□□□ 0.43
LSM1O15116 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
LSM1O15116 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.72■□□□□ 0.43
LSM1O15116 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LSM1O15116 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.72■□□□□ 0.43
LSM1O15116 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.72■□□□□ 0.43
LSM1O15116 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LSM1O15116 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LSM1O15116 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.71■□□□□ 0.43
LSM1O15116 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LSM1O15116 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC17.71■□□□□ 0.43
LSM1O15116 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LSM1O15116 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 ABHD17AP1-201ENST00000358206 933 ntBASIC17.71■□□□□ 0.43
LSM1O15116 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
LSM1O15116 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC17.71■□□□□ 0.43
LSM1O15116 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC17.71■□□□□ 0.43
LSM1O15116 MIR4674-201ENST00000582457 87 ntBASIC17.71■□□□□ 0.43
LSM1O15116 REXO1L10P-201ENST00000615707 1290 ntBASIC17.71■□□□□ 0.43
LSM1O15116 REXO1L12P-201ENST00000622156 912 ntBASIC17.71■□□□□ 0.43
LSM1O15116 AC113410.3-201ENST00000623366 203 ntBASIC17.71■□□□□ 0.43
LSM1O15116 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LSM1O15116 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
LSM1O15116 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.71■□□□□ 0.43
LSM1O15116 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
LSM1O15116 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
LSM1O15116 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LSM1O15116 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LSM1O15116 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
LSM1O15116 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LSM1O15116 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LSM1O15116 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LSM1O15116 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC17.7■□□□□ 0.42
LSM1O15116 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
LSM1O15116 GMCL1P1-201ENST00000463439 1581 ntBASIC17.7■□□□□ 0.42
LSM1O15116 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LSM1O15116 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LSM1O15116 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
LSM1O15116 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
LSM1O15116 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms