Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.47■□□□□ 0.87
COPB1P53618 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC20.47■□□□□ 0.87
COPB1P53618 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.47■□□□□ 0.87
COPB1P53618 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC20.47■□□□□ 0.87
COPB1P53618 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COPB1P53618 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
COPB1P53618 KSR1P1-201ENST00000446298 240 ntBASIC20.47■□□□□ 0.87
COPB1P53618 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC20.47■□□□□ 0.87
COPB1P53618 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COPB1P53618 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.47■□□□□ 0.87
COPB1P53618 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.47■□□□□ 0.87
COPB1P53618 AC073648.6-201ENST00000641589 218 ntBASIC20.47■□□□□ 0.87
COPB1P53618 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC20.47■□□□□ 0.87
COPB1P53618 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COPB1P53618 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COPB1P53618 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
COPB1P53618 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC20.47■□□□□ 0.87
COPB1P53618 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COPB1P53618 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COPB1P53618 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.47■□□□□ 0.87
COPB1P53618 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COPB1P53618 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.47■□□□□ 0.87
COPB1P53618 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COPB1P53618 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COPB1P53618 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COPB1P53618 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC20.47■□□□□ 0.87
COPB1P53618 AC067852.2-201ENST00000590513 2313 ntBASIC20.47■□□□□ 0.87
COPB1P53618 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
COPB1P53618 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.46■□□□□ 0.87
COPB1P53618 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.46■□□□□ 0.87
COPB1P53618 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.46■□□□□ 0.87
COPB1P53618 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.46■□□□□ 0.87
COPB1P53618 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COPB1P53618 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COPB1P53618 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COPB1P53618 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.46■□□□□ 0.87
COPB1P53618 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC20.46■□□□□ 0.87
COPB1P53618 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COPB1P53618 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COPB1P53618 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.46■□□□□ 0.87
COPB1P53618 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.46■□□□□ 0.87
COPB1P53618 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COPB1P53618 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COPB1P53618 AC008040.2-201ENST00000461049 708 ntBASIC20.46■□□□□ 0.87
COPB1P53618 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.46■□□□□ 0.87
COPB1P53618 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
COPB1P53618 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.46■□□□□ 0.87
COPB1P53618 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COPB1P53618 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
COPB1P53618 RCC2P3-201ENST00000418112 1537 ntBASIC20.46■□□□□ 0.87
COPB1P53618 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
COPB1P53618 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COPB1P53618 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COPB1P53618 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.46■□□□□ 0.87
COPB1P53618 AC008764.6-201ENST00000595909 2069 ntBASIC20.46■□□□□ 0.87
COPB1P53618 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.45■□□□□ 0.86
COPB1P53618 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.45■□□□□ 0.86
COPB1P53618 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.45■□□□□ 0.86
COPB1P53618 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
COPB1P53618 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.45■□□□□ 0.86
COPB1P53618 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.45■□□□□ 0.86
COPB1P53618 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.45■□□□□ 0.86
COPB1P53618 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
COPB1P53618 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.45■□□□□ 0.86
COPB1P53618 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.45■□□□□ 0.86
COPB1P53618 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
COPB1P53618 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
COPB1P53618 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COPB1P53618 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COPB1P53618 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.44■□□□□ 0.86
COPB1P53618 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.44■□□□□ 0.86
COPB1P53618 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
COPB1P53618 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.44■□□□□ 0.86
COPB1P53618 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.44■□□□□ 0.86
COPB1P53618 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
COPB1P53618 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.44■□□□□ 0.86
COPB1P53618 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COPB1P53618 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.44■□□□□ 0.86
COPB1P53618 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
COPB1P53618 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC20.44■□□□□ 0.86
COPB1P53618 CKBP1-201ENST00000565489 1086 ntBASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms