Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.08■□□□□ 0.49
LSM1O15116 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.08■□□□□ 0.49
LSM1O15116 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LSM1O15116 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
LSM1O15116 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LSM1O15116 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LSM1O15116 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
LSM1O15116 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.08■□□□□ 0.48
LSM1O15116 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.08■□□□□ 0.48
LSM1O15116 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 PRSS44-201ENST00000515154 1146 ntBASIC18.08■□□□□ 0.48
LSM1O15116 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.08■□□□□ 0.48
LSM1O15116 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.08■□□□□ 0.48
LSM1O15116 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.08■□□□□ 0.48
LSM1O15116 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.08■□□□□ 0.48
LSM1O15116 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
LSM1O15116 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.08■□□□□ 0.48
LSM1O15116 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.08■□□□□ 0.48
LSM1O15116 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.08■□□□□ 0.48
LSM1O15116 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LSM1O15116 KRT8P32-201ENST00000512863 1461 ntBASIC18.07■□□□□ 0.48
LSM1O15116 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.07■□□□□ 0.48
LSM1O15116 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.07■□□□□ 0.48
LSM1O15116 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.07■□□□□ 0.48
LSM1O15116 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.07■□□□□ 0.48
LSM1O15116 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.07■□□□□ 0.48
LSM1O15116 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
LSM1O15116 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
LSM1O15116 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.07■□□□□ 0.48
LSM1O15116 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
LSM1O15116 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LSM1O15116 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.06■□□□□ 0.48
LSM1O15116 KRT8P3-201ENST00000519669 1449 ntBASIC18.06■□□□□ 0.48
LSM1O15116 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.06■□□□□ 0.48
LSM1O15116 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.06■□□□□ 0.48
LSM1O15116 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.06■□□□□ 0.48
LSM1O15116 AL353708.3-201ENST00000610272 989 ntBASIC18.06■□□□□ 0.48
LSM1O15116 AC073648.6-201ENST00000641589 218 ntBASIC18.06■□□□□ 0.48
LSM1O15116 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.06■□□□□ 0.48
LSM1O15116 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 AC018470.1-201ENST00000624790 3129 ntBASIC18.06■□□□□ 0.48
LSM1O15116 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.06■□□□□ 0.48
LSM1O15116 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.06■□□□□ 0.48
LSM1O15116 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
LSM1O15116 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.06■□□□□ 0.48
LSM1O15116 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LSM1O15116 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
LSM1O15116 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.05■□□□□ 0.48
LSM1O15116 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
LSM1O15116 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms