Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
LSM1O15116 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM1O15116 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
LSM1O15116 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
LSM1O15116 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
LSM1O15116 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
LSM1O15116 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LSM1O15116 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.11■□□□□ 0.49
LSM1O15116 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.11■□□□□ 0.49
LSM1O15116 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
LSM1O15116 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.11■□□□□ 0.49
LSM1O15116 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.11■□□□□ 0.49
LSM1O15116 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
LSM1O15116 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM1O15116 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
LSM1O15116 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM1O15116 KRT18P6-201ENST00000555540 1265 ntBASIC18.11■□□□□ 0.49
LSM1O15116 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LSM1O15116 AC068587.9-201ENST00000641814 219 ntBASIC18.11■□□□□ 0.49
LSM1O15116 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM1O15116 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.11■□□□□ 0.49
LSM1O15116 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.11■□□□□ 0.49
LSM1O15116 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM1O15116 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
LSM1O15116 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LSM1O15116 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC18.11■□□□□ 0.49
LSM1O15116 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LSM1O15116 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LSM1O15116 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.11■□□□□ 0.49
LSM1O15116 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
LSM1O15116 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.1■□□□□ 0.49
LSM1O15116 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
LSM1O15116 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.1■□□□□ 0.49
LSM1O15116 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
LSM1O15116 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.1■□□□□ 0.49
LSM1O15116 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
LSM1O15116 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.1■□□□□ 0.49
LSM1O15116 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 ESRRAP1-201ENST00000400596 1257 ntBASIC18.1■□□□□ 0.49
LSM1O15116 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.1■□□□□ 0.49
LSM1O15116 AC004980.1-204ENST00000429707 299 ntBASIC18.1■□□□□ 0.49
LSM1O15116 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LSM1O15116 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.1■□□□□ 0.49
LSM1O15116 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
LSM1O15116 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.1■□□□□ 0.49
LSM1O15116 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.1■□□□□ 0.49
LSM1O15116 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LSM1O15116 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
LSM1O15116 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
LSM1O15116 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LSM1O15116 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.09■□□□□ 0.49
LSM1O15116 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LSM1O15116 NIFKP9-201ENST00000419265 221 ntBASIC18.09■□□□□ 0.49
LSM1O15116 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
LSM1O15116 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.09■□□□□ 0.49
LSM1O15116 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.09■□□□□ 0.49
LSM1O15116 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.09■□□□□ 0.49
LSM1O15116 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.09■□□□□ 0.49
LSM1O15116 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.09■□□□□ 0.49
LSM1O15116 RN7SL471P-201ENST00000580476 299 ntBASIC18.09■□□□□ 0.49
LSM1O15116 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC18.09■□□□□ 0.49
LSM1O15116 AC110285.5-201ENST00000611501 352 ntBASIC18.09■□□□□ 0.49
LSM1O15116 AC131212.4-201ENST00000623606 975 ntBASIC18.09■□□□□ 0.49
LSM1O15116 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.09■□□□□ 0.49
LSM1O15116 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.09■□□□□ 0.49
LSM1O15116 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC18.09■□□□□ 0.49
LSM1O15116 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.09■□□□□ 0.49
LSM1O15116 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LSM1O15116 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LSM1O15116 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
LSM1O15116 AL499627.1-201ENST00000569373 2188 ntBASIC18.08■□□□□ 0.49
LSM1O15116 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms