RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 PELP1Q8IZL8 1130 aaKnown RBP8.74□□□□□ -1.01
CSMD3-204ENST00000455883 MYT1Q01538 1121 aa8.71□□□□□ -1.01
CSMD3-204ENST00000455883 NISCHQ9Y2I1 1504 aa8.26□□□□□ -1.09
CSMD3-204ENST00000455883 CCER1Q8TC90 406 aaPredicted RBP8.24□□□□□ -1.09
CSMD3-204ENST00000455883 YTHDC1Q96MU7 727 aaKnown RBP8.19□□□□□ -1.1
CSMD3-204ENST00000455883 ZEB1P37275 1124 aaPredicted RBP8.16□□□□□ -1.1
CSMD3-204ENST00000455883 TTBK1Q5TCY1 1321 aaPredicted RBP8.07□□□□□ -1.12
CSMD3-204ENST00000455883 CENPBP07199 599 aaPredicted RBP8.05□□□□□ -1.12
CSMD3-204ENST00000455883 FAM9AQ8IZU1 332 aaPredicted RBP8.01□□□□□ -1.13
CSMD3-204ENST00000455883 APLP2Q06481 763 aa7.9□□□□□ -1.14
CSMD3-204ENST00000455883 ERICH6Q7L0X2 663 aa7.83□□□□□ -1.16
CSMD3-204ENST00000455883 NEFLP07196 543 aa7.78□□□□□ -1.16
CSMD3-204ENST00000455883 CLSPNQ9HAW4 1339 aa7.77□□□□□ -1.17
CSMD3-204ENST00000455883 MYT1LQ9UL68 1186 aa7.69□□□□□ -1.18
CSMD3-204ENST00000455883 DCAF8L2P0C7V8 631 aa7.66□□□□□ -1.18
CSMD3-204ENST00000455883 DAXXQ9UER7 740 aaPredicted RBP7.6□□□□□ -1.19
CSMD3-204ENST00000455883 SUPT5HO00267 1087 aaKnown RBP7.55□□□□□ -1.2
CSMD3-204ENST00000455883 RTL5Q5HYW3 569 aaPredicted RBP7.51□□□□□ -1.21
CSMD3-204ENST00000455883 ACIN1Q9UKV3 1341 aaKnown RBP7.49□□□□□ -1.21
CSMD3-204ENST00000455883 GLIPR1L2Q4G1C9 344 aa7.48□□□□□ -1.21
CSMD3-204ENST00000455883 TRIM26Q12899 539 aaPredicted RBP7.46□□□□□ -1.22
CSMD3-204ENST00000455883 CCDC180Q9P1Z9 1646 aa7.44□□□□□ -1.22
CSMD3-204ENST00000455883 PCGF6Q9BYE7 350 aa7.39□□□□□ -1.23
CSMD3-204ENST00000455883 TRIM41Q8WV44 630 aa7.36□□□□□ -1.23
CSMD3-204ENST00000455883 NEFMP07197 916 aa7.36□□□□□ -1.23
CSMD3-204ENST00000455883 ZNF316A6NFI3 1004 aaPredicted RBP7.35□□□□□ -1.23
CSMD3-204ENST00000455883 HRCP23327 699 aa7.34□□□□□ -1.23
CSMD3-204ENST00000455883 EIF5BO60841 1220 aaKnown RBP7.34□□□□□ -1.24
CSMD3-204ENST00000455883 ANP32EQ9BTT0 268 aa7.31□□□□□ -1.24
CSMD3-204ENST00000455883 ANP32BQ92688 251 aaKnown RBP7.29□□□□□ -1.24
CSMD3-204ENST00000455883 ARID4BQ4LE39 1312 aaPredicted RBP7.28□□□□□ -1.24
CSMD3-204ENST00000455883 DCAF1Q9Y4B6 1507 aa7.22□□□□□ -1.25
CSMD3-204ENST00000455883 UBTFP17480 764 aaKnown RBP7.21□□□□□ -1.25
CSMD3-204ENST00000455883 SHROOM4Q9ULL8 1493 aa7.21□□□□□ -1.25
CSMD3-204ENST00000455883 CDK11AQ9UQ88 783 aaPredicted RBP7.19□□□□□ -1.26
CSMD3-204ENST00000455883 ANP32AP39687 249 aaKnown RBP7.19□□□□□ -1.26
CSMD3-204ENST00000455883 NCLP19338 710 aaKnown RBP7.19□□□□□ -1.26
CSMD3-204ENST00000455883 ZBTB47Q9UFB7 747 aaPredicted RBP7.15□□□□□ -1.26
CSMD3-204ENST00000455883 UPF2Q9HAU5 1272 aaKnown RBP7.14□□□□□ -1.27
CSMD3-204ENST00000455883 DIEXFQ68CQ4 756 aaKnown RBP7.14□□□□□ -1.27
CSMD3-204ENST00000455883 NEUROD1Q13562 356 aa7.14□□□□□ -1.27
CSMD3-204ENST00000455883 TNNT2P45379 298 aaPredicted RBP7.12□□□□□ -1.27
CSMD3-204ENST00000455883 TRIM44Q96DX7 344 aaPredicted RBP7.12□□□□□ -1.27
CSMD3-204ENST00000455883 EEA1Q15075 1411 aa7.1□□□□□ -1.27
CSMD3-204ENST00000455883 KAT6BQ8WYB5 2073 aa7.1□□□□□ -1.27
CSMD3-204ENST00000455883 ANP32CO43423 234 aa7.1□□□□□ -1.27
CSMD3-204ENST00000455883 SLC24A1O60721 1099 aa7.08□□□□□ -1.28
CSMD3-204ENST00000455883 CFAP44Q96MT7 982 aa7.03□□□□□ -1.28
CSMD3-204ENST00000455883 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.02□□□□□ -1.29
CSMD3-204ENST00000455883 DDRGK1Q96HY6 314 aa7.01□□□□□ -1.29
CSMD3-204ENST00000455883 EHMT2Q96KQ7 1210 aa7.01□□□□□ -1.29
CSMD3-204ENST00000455883 ERICH6BQ5W0A0 696 aa7□□□□□ -1.29
CSMD3-204ENST00000455883 CHMP4BQ9H444 224 aaKnown RBP6.99□□□□□ -1.29
CSMD3-204ENST00000455883 USP35Q9P2H5 1018 aa6.99□□□□□ -1.29
CSMD3-204ENST00000455883 RANGAP1P46060 587 aaPredicted RBP6.99□□□□□ -1.29
CSMD3-204ENST00000455883 BECN1Q14457 450 aa6.99□□□□□ -1.29
CSMD3-204ENST00000455883 GOLGA6L22H0YM25 854 aa6.98□□□□□ -1.29
CSMD3-204ENST00000455883 PTMSP20962 102 aa6.97□□□□□ -1.29
CSMD3-204ENST00000455883 NRDCO43847 1150 aa6.97□□□□□ -1.29
CSMD3-204ENST00000455883 HSP90AA1P07900 732 aaKnown RBP6.96□□□□□ -1.3
CSMD3-204ENST00000455883 L1TD1Q5T7N2 865 aaKnown RBP6.95□□□□□ -1.3
CSMD3-204ENST00000455883 CHIC1Q5VXU3 224 aa6.93□□□□□ -1.3
CSMD3-204ENST00000455883 CANXP27824 592 aaKnown RBP6.92□□□□□ -1.3
CSMD3-204ENST00000455883 PPM1GO15355 546 aaPredicted RBP6.91□□□□□ -1.3
CSMD3-204ENST00000455883 TIMELESSQ9UNS1 1208 aa6.9□□□□□ -1.3
CSMD3-204ENST00000455883 ZCCHC6Q5VYS8 1495 aaKnown RBP6.9□□□□□ -1.3
CSMD3-204ENST00000455883 GOLGA6L6A8MZA4 724 aa6.9□□□□□ -1.31
CSMD3-204ENST00000455883 ATP1B4Q9UN42 357 aaPredicted RBP6.9□□□□□ -1.31
CSMD3-204ENST00000455883 TONSLQ96HA7 1378 aa6.89□□□□□ -1.31
CSMD3-204ENST00000455883 CDK11BP21127 795 aaKnown RBP6.88□□□□□ -1.31
CSMD3-204ENST00000455883 NACADO15069 1562 aa6.88□□□□□ -1.31
CSMD3-204ENST00000455883 BAZ1AQ9NRL2 1556 aaPredicted RBP6.88□□□□□ -1.31
CSMD3-204ENST00000455883 MS4A1P11836 297 aa6.88□□□□□ -1.31
CSMD3-204ENST00000455883 GTF3C3Q9Y5Q9 886 aa6.88□□□□□ -1.31
CSMD3-204ENST00000455883 HAP1P54257 671 aaPredicted RBP6.88□□□□□ -1.31
CSMD3-204ENST00000455883 CHAF1AQ13111 956 aaPredicted RBP6.87□□□□□ -1.31
CSMD3-204ENST00000455883 CDCA8Q53HL2 280 aa6.87□□□□□ -1.31
CSMD3-204ENST00000455883 MYH16Q9H6N6 1097 aa6.87□□□□□ -1.31
CSMD3-204ENST00000455883 RSF1Q96T23 1441 aaPredicted RBP6.86□□□□□ -1.31
CSMD3-204ENST00000455883 CHMP4AQ9BY43 222 aa6.85□□□□□ -1.31
CSMD3-204ENST00000455883 RB1CC1Q8TDY2 1594 aa6.84□□□□□ -1.31
CSMD3-204ENST00000455883 ANO8Q9HCE9 1232 aaPredicted RBP6.84□□□□□ -1.31
CSMD3-204ENST00000455883 CEP162Q5TB80 1403 aa6.84□□□□□ -1.32
CSMD3-204ENST00000455883 CASC1Q6TDU7 716 aa6.84□□□□□ -1.32
CSMD3-204ENST00000455883 LAS1LQ9Y4W2 734 aaKnown RBP6.82□□□□□ -1.32
CSMD3-204ENST00000455883 MYO15BQ96JP2 1530 aa6.81□□□□□ -1.32
CSMD3-204ENST00000455883 FHAD1B1AJZ9 1412 aa6.81□□□□□ -1.32
CSMD3-204ENST00000455883 POLR3GLQ9BT43 218 aa6.81□□□□□ -1.32
CSMD3-204ENST00000455883 ZRSR1Q15695 479 aaKnown RBP6.8□□□□□ -1.32
CSMD3-204ENST00000455883 ZNF326Q5BKZ1 582 aaKnown RBP6.8□□□□□ -1.32
CSMD3-204ENST00000455883 GOLGA3Q08378 1498 aa6.79□□□□□ -1.32
CSMD3-204ENST00000455883 PHLDB1Q86UU1 1377 aa6.79□□□□□ -1.32
CSMD3-204ENST00000455883 CCDC136Q96JN2 1154 aa6.79□□□□□ -1.32
CSMD3-204ENST00000455883 CCDC34Q96HJ3 373 aa6.78□□□□□ -1.32
CSMD3-204ENST00000455883 CEP164Q9UPV0 1460 aa6.77□□□□□ -1.32
CSMD3-204ENST00000455883 CHMP4CQ96CF2 233 aa6.77□□□□□ -1.33
CSMD3-204ENST00000455883 PNNQ9H307 717 aaKnown RBP6.77□□□□□ -1.33
CSMD3-204ENST00000455883 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.77□□□□□ -1.33
CSMD3-204ENST00000455883 HNRNPUL2Q1KMD3 747 aaKnown RBP6.77□□□□□ -1.33
CSMD3-204ENST00000455883 MTERF4Q7Z6M4 381 aaKnown RBP6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms