RNA–Protein interactions for RNA: ENST00000412413.1

AC004009.1-201, humanhuman

TSL 5 BASIC

Gene AC004009.1, Length 567 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004009.1-201ENST00000412413 AEBP2Q6ZN18 517 aaPredicted RBP22.12■■□□□ 1.13
AC004009.1-201ENST00000412413 CHIC1Q5VXU3 224 aa21.65■■□□□ 1.06
AC004009.1-201ENST00000412413 NISCHQ9Y2I1 1504 aa20.38■□□□□ 0.85
AC004009.1-201ENST00000412413 PHF23Q9BUL5 403 aaPredicted RBP19.02■□□□□ 0.64
AC004009.1-201ENST00000412413 SENP3Q9H4L4 574 aaPredicted RBP18.8■□□□□ 0.6
AC004009.1-201ENST00000412413 ABCC9O60706 1549 aa18.5■□□□□ 0.55
AC004009.1-201ENST00000412413 CCDC180Q9P1Z9 1646 aa18.19■□□□□ 0.5
AC004009.1-201ENST00000412413 PLPPR3Q6T4P5 718 aa17.62■□□□□ 0.41
AC004009.1-201ENST00000412413 DCAF8L2P0C7V8 631 aa17.52■□□□□ 0.4
AC004009.1-201ENST00000412413 RB1CC1Q8TDY2 1594 aa17.45■□□□□ 0.38
AC004009.1-201ENST00000412413 DNAJC5BQ9UF47 199 aa17.44■□□□□ 0.38
AC004009.1-201ENST00000412413 FOXD1Q16676 465 aa17.43■□□□□ 0.38
AC004009.1-201ENST00000412413 PABPN1Q86U42 306 aaKnown RBP eCLIP17.31■□□□□ 0.36
AC004009.1-201ENST00000412413 NACADO15069 1562 aa17.29■□□□□ 0.36
AC004009.1-201ENST00000412413 MYO15BQ96JP2 1530 aa16.97■□□□□ 0.31
AC004009.1-201ENST00000412413 BICRAQ9NZM4 1560 aa16.92■□□□□ 0.3
AC004009.1-201ENST00000412413 UNC13AQ9UPW8 1703 aa16.92■□□□□ 0.3
AC004009.1-201ENST00000412413 ZCCHC6Q5VYS8 1495 aaKnown RBP16.86■□□□□ 0.29
AC004009.1-201ENST00000412413 ADRA2BP18089 450 aa16.8■□□□□ 0.28
AC004009.1-201ENST00000412413 PPP6R1Q9UPN7 881 aa16.79■□□□□ 0.28
AC004009.1-201ENST00000412413 SCRIBQ14160 1630 aa16.74■□□□□ 0.27
AC004009.1-201ENST00000412413 DCAF1Q9Y4B6 1507 aa16.74■□□□□ 0.27
AC004009.1-201ENST00000412413 CECR2Q9BXF3 1484 aa16.65■□□□□ 0.26
AC004009.1-201ENST00000412413 SHROOM4Q9ULL8 1493 aa16.63■□□□□ 0.25
AC004009.1-201ENST00000412413 CC2D2AQ9P2K1 1620 aa16.6■□□□□ 0.25
AC004009.1-201ENST00000412413 EIF4G1Q04637 1599 aaKnown RBP16.55■□□□□ 0.24
AC004009.1-201ENST00000412413 PIAS4Q8N2W9 510 aaPredicted RBP16.49■□□□□ 0.23
AC004009.1-201ENST00000412413 MSH5O43196 834 aa16.09■□□□□ 0.17
AC004009.1-201ENST00000412413 DNAJC5Q9H3Z4 198 aa16.04■□□□□ 0.16
AC004009.1-201ENST00000412413 NCAPD3P42695 1498 aa16.01■□□□□ 0.15
AC004009.1-201ENST00000412413 ERCC6Q03468 1493 aa15.99■□□□□ 0.15
AC004009.1-201ENST00000412413 POTEDQ86YR6 584 aa15.98■□□□□ 0.15
AC004009.1-201ENST00000412413 ATAD2BQ9ULI0 1458 aa15.97■□□□□ 0.15
AC004009.1-201ENST00000412413 SMARCA2P51531 1590 aa15.88■□□□□ 0.13
AC004009.1-201ENST00000412413 SMARCA4P51532 1647 aa15.88■□□□□ 0.13
AC004009.1-201ENST00000412413 CUX2O14529 1486 aa15.87■□□□□ 0.13
AC004009.1-201ENST00000412413 NESP48681 1621 aa15.85■□□□□ 0.13
AC004009.1-201ENST00000412413 BAZ1BQ9UIG0 1483 aaKnown RBP15.84■□□□□ 0.13
AC004009.1-201ENST00000412413 HMGXB3Q12766 1538 aa15.83■□□□□ 0.12
AC004009.1-201ENST00000412413 BAZ1AQ9NRL2 1556 aaPredicted RBP15.82■□□□□ 0.12
AC004009.1-201ENST00000412413 MROH2BQ7Z745 1585 aa15.75■□□□□ 0.11
AC004009.1-201ENST00000412413 PEG3Q9GZU2 1588 aa15.66■□□□□ 0.1
AC004009.1-201ENST00000412413 PDS5BQ9NTI5 1447 aa15.62■□□□□ 0.09
AC004009.1-201ENST00000412413 LAMC3Q9Y6N6 1575 aa15.62■□□□□ 0.09
AC004009.1-201ENST00000412413 THOC2Q8NI27 1593 aaKnown RBP15.58■□□□□ 0.08
AC004009.1-201ENST00000412413 CADPSQ9ULU8 1353 aa15.57■□□□□ 0.08
AC004009.1-201ENST00000412413 PPP4R3CPQ6ZMV5 832 aa15.53■□□□□ 0.08
AC004009.1-201ENST00000412413 WIZO95785 1651 aa15.51■□□□□ 0.07
AC004009.1-201ENST00000412413 KIF21AQ7Z4S6 1674 aa15.51■□□□□ 0.07
AC004009.1-201ENST00000412413 MRC2Q9UBG0 1479 aa15.47■□□□□ 0.07
AC004009.1-201ENST00000412413 TRIM41Q8WV44 630 aa15.45■□□□□ 0.06
AC004009.1-201ENST00000412413 RSF1Q96T23 1441 aaPredicted RBP15.41■□□□□ 0.06
AC004009.1-201ENST00000412413 SCAF1Q9H7N4 1312 aaKnown RBP15.41■□□□□ 0.06
AC004009.1-201ENST00000412413 CEP164Q9UPV0 1460 aa15.4■□□□□ 0.06
AC004009.1-201ENST00000412413 FANCD2Q9BXW9 1451 aa15.4■□□□□ 0.06
AC004009.1-201ENST00000412413 WDR62O43379 1518 aa15.38■□□□□ 0.05
AC004009.1-201ENST00000412413 CFTRP13569 1480 aa15.33■□□□□ 0.05
AC004009.1-201ENST00000412413 TOP2AP11388 1531 aaKnown RBP15.31■□□□□ 0.04
AC004009.1-201ENST00000412413 OSCARQ8IYS5 282 aa15.26■□□□□ 0.03
AC004009.1-201ENST00000412413 URB2Q14146 1524 aaKnown RBP15.25■□□□□ 0.03
AC004009.1-201ENST00000412413 MAPK8IP2Q13387 824 aaPredicted RBP15.24■□□□□ 0.03
AC004009.1-201ENST00000412413 CCDC88BA6NC98 1476 aa15.2■□□□□ 0.02
AC004009.1-201ENST00000412413 KCNA4P22459 653 aa15.19■□□□□ 0.02
AC004009.1-201ENST00000412413 NCBP3Q53F19 620 aaKnown RBP15.15■□□□□ 0.02
AC004009.1-201ENST00000412413 ZNF608Q9ULD9 1512 aaPredicted RBP15.11■□□□□ 0.01
AC004009.1-201ENST00000412413 IFT140Q96RY7 1462 aa15.1■□□□□ 0.01
AC004009.1-201ENST00000412413 CNKSR2Q8WXI2 1034 aa15.08■□□□□ 0
AC004009.1-201ENST00000412413 TOPBP1Q92547 1522 aa15.07■□□□□ 0
AC004009.1-201ENST00000412413 FBLN2P98095 1184 aa15.04■□□□□ -0
AC004009.1-201ENST00000412413 AQRO60306 1485 aaKnown RBP eCLIP15□□□□□ -0.01
AC004009.1-201ENST00000412413 ABCC8Q09428 1581 aa14.99□□□□□ -0.01
AC004009.1-201ENST00000412413 DMRT2Q9Y5R5 561 aa14.99□□□□□ -0.01
AC004009.1-201ENST00000412413 PRDM2Q13029 1718 aa14.98□□□□□ -0.01
AC004009.1-201ENST00000412413 DNMBPQ6XZF7 1577 aa14.97□□□□□ -0.01
AC004009.1-201ENST00000412413 CYB5RLQ6IPT4 315 aa14.96□□□□□ -0.01
AC004009.1-201ENST00000412413 RIMBP3CA6NJZ7 1639 aa14.95□□□□□ -0.02
AC004009.1-201ENST00000412413 RIMBP3BA6NNM3 1639 aa14.95□□□□□ -0.02
AC004009.1-201ENST00000412413 RIMBP3Q9UFD9 1639 aa14.95□□□□□ -0.02
AC004009.1-201ENST00000412413 EIF4G3O43432 1585 aaKnown RBP14.94□□□□□ -0.02
AC004009.1-201ENST00000412413 TDRD9Q8NDG6 1382 aaKnown RBP14.93□□□□□ -0.02
AC004009.1-201ENST00000412413 ARHGEF11O15085 1522 aa14.92□□□□□ -0.02
AC004009.1-201ENST00000412413 POLA1P09884 1462 aaPredicted RBP14.92□□□□□ -0.02
AC004009.1-201ENST00000412413 RAD54L2Q9Y4B4 1467 aa14.92□□□□□ -0.02
AC004009.1-201ENST00000412413 SOGA1O94964 1423 aa14.91□□□□□ -0.02
AC004009.1-201ENST00000412413 NPM3O75607 178 aaKnown RBP14.89□□□□□ -0.03
AC004009.1-201ENST00000412413 SUPT5HO00267 1087 aaKnown RBP14.87□□□□□ -0.03
AC004009.1-201ENST00000412413 TRHP20396 242 aaPredicted RBP14.87□□□□□ -0.03
AC004009.1-201ENST00000412413 TARBP1Q13395 1621 aaKnown RBP14.87□□□□□ -0.03
AC004009.1-201ENST00000412413 CHMP7Q8WUX9 453 aaPredicted RBP14.85□□□□□ -0.03
AC004009.1-201ENST00000412413 FGD5Q6ZNL6 1462 aa14.83□□□□□ -0.03
AC004009.1-201ENST00000412413 SNAPC4Q5SXM2 1469 aa14.82□□□□□ -0.04
AC004009.1-201ENST00000412413 CHD1O14646 1710 aa14.8□□□□□ -0.04
AC004009.1-201ENST00000412413 ARAP1Q96P48 1450 aa14.79□□□□□ -0.04
AC004009.1-201ENST00000412413 CUX1P39880 1505 aa14.78□□□□□ -0.04
AC004009.1-201ENST00000412413 RNF216Q9NWF9 866 aaPredicted RBP14.77□□□□□ -0.05
AC004009.1-201ENST00000412413 GRIN2BQ13224 1484 aa14.75□□□□□ -0.05
AC004009.1-201ENST00000412413 MAGI1Q96QZ7 1491 aaPredicted RBP14.71□□□□□ -0.05
AC004009.1-201ENST00000412413 SYNJ2O15056 1496 aa14.69□□□□□ -0.06
AC004009.1-201ENST00000412413 GAPVD1Q14C86 1478 aa14.69□□□□□ -0.06
AC004009.1-201ENST00000412413 SYNJ1O43426 1573 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms