RNA–Protein interactions for RNA: ENST00000381196.8

PTPRD-203, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTPRD, Length 9,911 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-203ENST00000381196 NISCHQ9Y2I1 1504 aa8.6□□□□□ -1.03
PTPRD-203ENST00000381196 MYT1Q01538 1121 aa8.5□□□□□ -1.05
PTPRD-203ENST00000381196 PELP1Q8IZL8 1130 aaKnown RBP8.33□□□□□ -1.08
PTPRD-203ENST00000381196 DCAF8L2P0C7V8 631 aa8.3□□□□□ -1.08
PTPRD-203ENST00000381196 TTBK1Q5TCY1 1321 aaPredicted RBP8.02□□□□□ -1.13
PTPRD-203ENST00000381196 ZEB1P37275 1124 aaPredicted RBP7.79□□□□□ -1.16
PTPRD-203ENST00000381196 CCDC180Q9P1Z9 1646 aa7.71□□□□□ -1.17
PTPRD-203ENST00000381196 FAM9AQ8IZU1 332 aaPredicted RBP7.62□□□□□ -1.19
PTPRD-203ENST00000381196 CLSPNQ9HAW4 1339 aa7.57□□□□□ -1.2
PTPRD-203ENST00000381196 CENPBP07199 599 aaPredicted RBP7.55□□□□□ -1.2
PTPRD-203ENST00000381196 CCER1Q8TC90 406 aaPredicted RBP7.52□□□□□ -1.21
PTPRD-203ENST00000381196 YTHDC1Q96MU7 727 aaKnown RBP7.49□□□□□ -1.21
PTPRD-203ENST00000381196 SUPT5HO00267 1087 aaKnown RBP7.49□□□□□ -1.21
PTPRD-203ENST00000381196 MYT1LQ9UL68 1186 aa7.41□□□□□ -1.22
PTPRD-203ENST00000381196 APLP2Q06481 763 aa7.4□□□□□ -1.22
PTPRD-203ENST00000381196 SHROOM4Q9ULL8 1493 aa7.37□□□□□ -1.23
PTPRD-203ENST00000381196 ERICH6Q7L0X2 663 aa7.35□□□□□ -1.23
PTPRD-203ENST00000381196 ZCCHC6Q5VYS8 1495 aaKnown RBP7.33□□□□□ -1.24
PTPRD-203ENST00000381196 EHMT2Q96KQ7 1210 aa7.32□□□□□ -1.24
PTPRD-203ENST00000381196 DCAF1Q9Y4B6 1507 aa7.29□□□□□ -1.24
PTPRD-203ENST00000381196 HRCP23327 699 aa7.26□□□□□ -1.25
PTPRD-203ENST00000381196 ATP1B4Q9UN42 357 aaPredicted RBP7.17□□□□□ -1.26
PTPRD-203ENST00000381196 RANGAP1P46060 587 aaPredicted RBP7.15□□□□□ -1.26
PTPRD-203ENST00000381196 TRIM26Q12899 539 aaPredicted RBP7.15□□□□□ -1.27
PTPRD-203ENST00000381196 MYO15BQ96JP2 1530 aa7.12□□□□□ -1.27
PTPRD-203ENST00000381196 NEFLP07196 543 aa7.12□□□□□ -1.27
PTPRD-203ENST00000381196 ABCC9O60706 1549 aa7.1□□□□□ -1.27
PTPRD-203ENST00000381196 ACIN1Q9UKV3 1341 aaKnown RBP7.08□□□□□ -1.28
PTPRD-203ENST00000381196 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.04□□□□□ -1.28
PTPRD-203ENST00000381196 HNRNPUL2Q1KMD3 747 aaKnown RBP7.04□□□□□ -1.28
PTPRD-203ENST00000381196 UBTFP17480 764 aaKnown RBP7.01□□□□□ -1.29
PTPRD-203ENST00000381196 GLIPR1L2Q4G1C9 344 aa6.99□□□□□ -1.29
PTPRD-203ENST00000381196 NACADO15069 1562 aa6.98□□□□□ -1.29
PTPRD-203ENST00000381196 TRIM41Q8WV44 630 aa6.98□□□□□ -1.29
PTPRD-203ENST00000381196 RB1CC1Q8TDY2 1594 aa6.94□□□□□ -1.3
PTPRD-203ENST00000381196 EEA1Q15075 1411 aa6.94□□□□□ -1.3
PTPRD-203ENST00000381196 CHIC1Q5VXU3 224 aa6.93□□□□□ -1.3
PTPRD-203ENST00000381196 ARID4BQ4LE39 1312 aaPredicted RBP6.93□□□□□ -1.3
PTPRD-203ENST00000381196 DAXXQ9UER7 740 aaPredicted RBP6.93□□□□□ -1.3
PTPRD-203ENST00000381196 PCGF6Q9BYE7 350 aa6.93□□□□□ -1.3
PTPRD-203ENST00000381196 RTL5Q5HYW3 569 aaPredicted RBP6.89□□□□□ -1.31
PTPRD-203ENST00000381196 SCRIBQ14160 1630 aa6.86□□□□□ -1.31
PTPRD-203ENST00000381196 FBLN2P98095 1184 aa6.83□□□□□ -1.32
PTPRD-203ENST00000381196 BAZ1AQ9NRL2 1556 aaPredicted RBP6.83□□□□□ -1.32
PTPRD-203ENST00000381196 PABPN1Q86U42 306 aaKnown RBP eCLIP6.82□□□□□ -1.32
PTPRD-203ENST00000381196 ERICH6BQ5W0A0 696 aa6.82□□□□□ -1.32
PTPRD-203ENST00000381196 ANP32EQ9BTT0 268 aa6.8□□□□□ -1.32
PTPRD-203ENST00000381196 SLC4A1APQ9BWU0 796 aaKnown RBP6.8□□□□□ -1.32
PTPRD-203ENST00000381196 EIF5BO60841 1220 aaKnown RBP6.79□□□□□ -1.32
PTPRD-203ENST00000381196 POLR3GLQ9BT43 218 aa6.77□□□□□ -1.33
PTPRD-203ENST00000381196 ESF1Q9H501 851 aaKnown RBP6.77□□□□□ -1.33
PTPRD-203ENST00000381196 DIEXFQ68CQ4 756 aaKnown RBP6.77□□□□□ -1.33
PTPRD-203ENST00000381196 BCANQ96GW7 911 aa6.74□□□□□ -1.33
PTPRD-203ENST00000381196 ITGAEP38570 1179 aa6.74□□□□□ -1.33
PTPRD-203ENST00000381196 NCLP19338 710 aaKnown RBP6.74□□□□□ -1.33
PTPRD-203ENST00000381196 NEUROD1Q13562 356 aa6.73□□□□□ -1.33
PTPRD-203ENST00000381196 TOP2AP11388 1531 aaKnown RBP6.73□□□□□ -1.33
PTPRD-203ENST00000381196 NPM1P06748 294 aaKnown RBP eCLIP6.71□□□□□ -1.34
PTPRD-203ENST00000381196 ZNF316A6NFI3 1004 aaPredicted RBP6.71□□□□□ -1.34
PTPRD-203ENST00000381196 CDK11AQ9UQ88 783 aaPredicted RBP6.7□□□□□ -1.34
PTPRD-203ENST00000381196 GOLGA3Q08378 1498 aa6.7□□□□□ -1.34
PTPRD-203ENST00000381196 SMARCA2P51531 1590 aa6.69□□□□□ -1.34
PTPRD-203ENST00000381196 RSF1Q96T23 1441 aaPredicted RBP6.68□□□□□ -1.34
PTPRD-203ENST00000381196 ANP32AP39687 249 aaKnown RBP6.68□□□□□ -1.34
PTPRD-203ENST00000381196 WRNQ14191 1432 aaPredicted RBP eCLIP6.66□□□□□ -1.34
PTPRD-203ENST00000381196 SMARCA4P51532 1647 aa6.66□□□□□ -1.34
PTPRD-203ENST00000381196 TIMELESSQ9UNS1 1208 aa6.66□□□□□ -1.34
PTPRD-203ENST00000381196 BAZ1BQ9UIG0 1483 aaKnown RBP6.66□□□□□ -1.34
PTPRD-203ENST00000381196 PLPPR3Q6T4P5 718 aa6.66□□□□□ -1.34
PTPRD-203ENST00000381196 KIF21BO75037 1637 aa6.65□□□□□ -1.34
PTPRD-203ENST00000381196 PRDM2Q13029 1718 aa6.63□□□□□ -1.35
PTPRD-203ENST00000381196 CEP164Q9UPV0 1460 aa6.63□□□□□ -1.35
PTPRD-203ENST00000381196 TRIM52Q96A61 297 aa6.62□□□□□ -1.35
PTPRD-203ENST00000381196 DDRGK1Q96HY6 314 aa6.61□□□□□ -1.35
PTPRD-203ENST00000381196 STAG3Q9UJ98 1225 aa6.61□□□□□ -1.35
PTPRD-203ENST00000381196 GTF3C3Q9Y5Q9 886 aa6.61□□□□□ -1.35
PTPRD-203ENST00000381196 CNGB1Q14028 1251 aaPredicted RBP6.61□□□□□ -1.35
PTPRD-203ENST00000381196 FAM50AQ14320 339 aaKnown RBP6.6□□□□□ -1.35
PTPRD-203ENST00000381196 PTMSP20962 102 aa6.6□□□□□ -1.35
PTPRD-203ENST00000381196 ANP32BQ92688 251 aaKnown RBP6.6□□□□□ -1.35
PTPRD-203ENST00000381196 SLC24A1O60721 1099 aa6.6□□□□□ -1.35
PTPRD-203ENST00000381196 TRIM44Q96DX7 344 aaPredicted RBP6.6□□□□□ -1.35
PTPRD-203ENST00000381196 PPARGC1BQ86YN6 1023 aaKnown RBP6.59□□□□□ -1.35
PTPRD-203ENST00000381196 TNIKQ9UKE5 1360 aa6.59□□□□□ -1.35
PTPRD-203ENST00000381196 USP35Q9P2H5 1018 aa6.58□□□□□ -1.36
PTPRD-203ENST00000381196 ANP32CO43423 234 aa6.57□□□□□ -1.36
PTPRD-203ENST00000381196 ARID3CA6NKF2 412 aa6.57□□□□□ -1.36
PTPRD-203ENST00000381196 NEFMP07197 916 aa6.57□□□□□ -1.36
PTPRD-203ENST00000381196 ZNF326Q5BKZ1 582 aaKnown RBP6.56□□□□□ -1.36
PTPRD-203ENST00000381196 TNNT2P45379 298 aaPredicted RBP6.56□□□□□ -1.36
PTPRD-203ENST00000381196 CEP162Q5TB80 1403 aa6.56□□□□□ -1.36
PTPRD-203ENST00000381196 WIZO95785 1651 aa6.56□□□□□ -1.36
PTPRD-203ENST00000381196 PPM1GO15355 546 aaPredicted RBP6.56□□□□□ -1.36
PTPRD-203ENST00000381196 ERICH3Q5RHP9 1530 aa6.55□□□□□ -1.36
PTPRD-203ENST00000381196 ZBTB47Q9UFB7 747 aaPredicted RBP6.55□□□□□ -1.36
PTPRD-203ENST00000381196 EIF4G1Q04637 1599 aaKnown RBP6.54□□□□□ -1.36
PTPRD-203ENST00000381196 ZNF777Q9ULD5 760 aaPredicted RBP6.54□□□□□ -1.36
PTPRD-203ENST00000381196 UNC13AQ9UPW8 1703 aa6.54□□□□□ -1.36
PTPRD-203ENST00000381196 PEG3Q9GZU2 1588 aa6.53□□□□□ -1.36
PTPRD-203ENST00000381196 CLIP1P30622 1438 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms