RNA–Protein interactions for RNA: ENST00000317702.9

TUBB6-201, Transcript of tubulin beta 6 class V, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TUBB6, Length 2,064 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TUBB6-201ENST00000317702 UTP3Q9NQZ2 479 aaKnown RBP eCLIP30.64■■■□□ 2.53e-6■■■■■ 94.9
TUBB6-201ENST00000317702 SF3B1O75533 1304 aaKnown RBP eCLIP29.31■■■□□ 2.289e-7■■■■■ 44.8
TUBB6-201ENST00000317702 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP21.92■■□□□ 1.15e-6■■■■□ 22.8
TUBB6-201ENST00000317702 RBM15Q96T37 977 aaKnown RBP eCLIP29.91■■■□□ 2.381e-6■■■□□ 19.2
TUBB6-201ENST00000317702 SUB1P53999 127 aaKnown RBP eCLIP22.91■■□□□ 1.261e-6■■■□□ 18.3
TUBB6-201ENST00000317702 ZNF800Q2TB10 664 aaPredicted RBP eCLIP26■■□□□ 1.753e-6■■■□□ 17.8
TUBB6-201ENST00000317702 AQRO60306 1485 aaKnown RBP eCLIP43.3■■■■■ 4.522e-6■■■□□ 15.6
TUBB6-201ENST00000317702 PUM2Q8TB72 1066 aaKnown RBP eCLIP27.31■■□□□ 1.962e-11■■■□□ 15.6
TUBB6-201ENST00000317702 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP25.86■■□□□ 1.733e-7■■□□□ 13
TUBB6-201ENST00000317702 RPS3P23396 243 aaKnown RBP eCLIP28.06■■■□□ 2.083e-6■■□□□ 12.5
TUBB6-201ENST00000317702 SF3B4Q15427 424 aaKnown RBP eCLIP25.78■■□□□ 1.724e-12■■□□□ 12.2
TUBB6-201ENST00000317702 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP31.95■■■□□ 2.712e-7■■□□□ 12.1
TUBB6-201ENST00000317702 YBX3P16989 372 aaKnown RBP eCLIP31.19■■■□□ 2.587e-7■■□□□ 11.7
TUBB6-201ENST00000317702 DDX6P26196 483 aaKnown RBP eCLIP28.19■■■□□ 2.18e-7■□□□□ 11.2
TUBB6-201ENST00000317702 PUM1Q14671 1186 aaKnown RBP eCLIP26.96■■□□□ 1.917e-6■□□□□ 10.1
TUBB6-201ENST00000317702 ZNF622Q969S3 477 aaKnown RBP eCLIP32.73■■■□□ 2.832e-8■□□□□ 9.9
TUBB6-201ENST00000317702 DDX3XO00571 662 aaKnown RBP eCLIP30.93■■■□□ 2.544e-13■□□□□ 9.3
TUBB6-201ENST00000317702 UPF1Q92900 1129 aaKnown RBP eCLIP31.95■■■□□ 2.71e-6■□□□□ 8.9
TUBB6-201ENST00000317702 PABPC4Q13310 644 aaKnown RBP eCLIP31.47■■■□□ 2.633e-13■□□□□ 8.1
Retrieved 19 of 19 RNA–protein pairs in 4.8 ms