RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 C3orf49Q96BT1 292 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 PPP3R2Q96LZ3 170 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 R3HDM2Q9Y2K5 976 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 SETD1AO15047 1707 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 BCLAF3A2AJT9 711 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC16A5O15375 505 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 TCEA3O75764 348 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 CLDN7O95471 211 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 HYAL1Q12794 435 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 GPRIN3Q6ZVF9 776 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 TMPRSS9Q7Z410 1059 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 LRRN4Q8WUT4 740 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 EFHD2Q96C19 240 aaPredicted RBP9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 EPB41L4BQ9H329 900 aa9.01□□□□□ -0.97
LIMCH1-202ENST00000381753 LIN7AO14910 233 aaPredicted RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 KDELR3O43731 214 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 TRBC1P01850 177 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 SPATA31C1P0DKV0 1188 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 GKP32189 559 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ST3GAL2Q16842 350 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 GPR33Q49SQ1 333 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 CPTPQ5TA50 214 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 PGM2L1Q6PCE3 622 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 DPY19L3Q6ZPD9 716 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 SHISA6Q6ZSJ9 500 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 PIGWQ7Z7B1 504 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 TRPV1Q8NER1 839 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 FBXO30Q8TB52 745 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 RGMAQ96B86 450 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 UGT1A9O60656 530 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 UGT1A6P19224 532 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 UGT1A4P22310 534 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 UGT1A3P35503 534 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 GRIA3P42263 894 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 NCBP2P52298 156 aaKnown RBP eCLIP9□□□□□ -0.97
LIMCH1-202ENST00000381753 RAD23BP54727 409 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 RAB8AP61006 207 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 SAMD4BQ5PRF9 694 aaKnown RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 CDC73Q6P1J9 531 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 LANCL3Q6ZV70 420 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 SMG8Q8ND04 991 aaKnown RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 TRPV3Q8NET8 790 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 OR52K2Q8NGK3 314 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 KCTD4Q8WVF5 259 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ZBED3Q96IU2 234 aaPredicted RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 KCTD15Q96SI1 283 aaPredicted RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 CEP44Q9C0F1 390 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 UGT1A7Q9HAW7 530 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 UGT1A10Q9HAW8 530 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 UGT1A8Q9HAW9 530 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 DNAAF2Q9NVR5 837 aaKnown RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 PRODH2Q9UF12 536 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 AP1M2Q9Y6Q5 423 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ADGRB1O14514 1584 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 STK16O75716 305 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 GNAZP19086 355 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 TFEBP19484 476 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ETV3P41162 512 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 OR2B6P58173 313 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ABHD18Q0P651 414 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ALG1LQ6GMV1 187 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 MTFR2Q6P444 385 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 OR9K2Q8NGE7 335 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 SHKBP1Q8TBC3 707 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 PLEKHG4BQ96PX9 1271 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 NOD2Q9HC29 1040 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 KCND1Q9NSA2 647 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ATP6AP2A0A1C7CYW4 349 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ZNF860A6NHJ4 632 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 GFRA2O00451 464 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 CAPN5O15484 640 aaPredicted RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 ATP6AP2O75787 350 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ENGP17813 658 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 TFE3P19532 575 aaPredicted RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 BDKRB1P46663 353 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 CRADDP78560 199 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 CHRNA6Q15825 494 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 TRPM8Q7Z2W7 1104 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 ZNF687Q8N1G0 1237 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC44A3Q8N4M1 653 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 MS4A14Q96JA4 679 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 MYADMQ96S97 322 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 FUT8Q9BYC5 575 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 UBAP1Q9NZ09 502 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 IKZF2Q9UKS7 526 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 TBX1O43435 398 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 KLRC4O43908 158 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 CPNE3O75131 537 aaKnown RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 ECDO95905 644 aaPredicted RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 HSD17B7P56937 341 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 NAA20P61599 178 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 CHIT1Q13231 466 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 MAMLD1Q13495 774 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 PTGES3Q15185 160 aaKnown RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 FHL5Q5TD97 284 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 SLC26A9Q7LBE3 791 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 RANBP3LQ86VV4 465 aaPredicted RBP9□□□□□ -0.97
LIMCH1-202ENST00000381753 NUDT13Q86X67 352 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 NPAS3Q8IXF0 933 aa9□□□□□ -0.97
LIMCH1-202ENST00000381753 KAT5Q92993 513 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms