RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CATSPERZQ9NTU4 200 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 POT1Q9NUX5 634 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 KCNK4Q9NYG8 393 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 CPNE7Q9UBL6 633 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 SOX13Q9UN79 622 aa12.77□□□□□ -0.37
CLK3-224ENST00000568605 SPEGQ15772 3267 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 ACACAQ13085 2346 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 IGF2RP11717 2491 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 TCRBV7S3A2A0A539 114 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 MGAT4DA6NG13 374 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 KIF2AO00139 706 aaPredicted RBP12.76□□□□□ -0.37
CLK3-224ENST00000568605 NTN3O00634 580 aaPredicted RBP12.76□□□□□ -0.37
CLK3-224ENST00000568605 DNALI1O14645 258 aaPredicted RBP12.76□□□□□ -0.37
CLK3-224ENST00000568605 POP7O75817 140 aaKnown RBP12.76□□□□□ -0.37
CLK3-224ENST00000568605 CPNE6O95741 557 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 GOT2P00505 430 aaKnown RBP12.76□□□□□ -0.37
CLK3-224ENST00000568605 VIPP01282 170 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 FTH1P02794 183 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 ALDH4A1P30038 563 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 TTPAP49638 278 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 ARSDP51689 593 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 EPHA4P54764 986 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 CRADDP78560 199 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 CKAP4Q07065 602 aaKnown RBP12.76□□□□□ -0.37
CLK3-224ENST00000568605 EIF3IQ13347 325 aaKnown RBP12.76□□□□□ -0.37
CLK3-224ENST00000568605 DBN1Q16643 649 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 ISXQ2M1V0 245 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.76□□□□□ -0.37
CLK3-224ENST00000568605 ANKRD22Q5VYY1 191 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 ABRAXAS1Q6UWZ7 409 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 SFTPA2Q8IWL1 248 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 SGF29Q96ES7 293 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 KIFC1Q9BW19 673 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 NRSN2Q9GZP1 204 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 PRDM8Q9NQV8 689 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 CHRAC1Q9NRG0 131 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 TREX1Q9NSU2 369 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 SLC23A2Q9UGH3 650 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 SLC2A6Q9UGQ3 507 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 RABGEF1Q9UJ41 708 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 ACSL5Q9ULC5 683 aa12.76□□□□□ -0.37
CLK3-224ENST00000568605 C17orf113A0A1B0GUU1 675 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 MAGEB16A2A368 324 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 OR51F1A6NGY5 319 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 LILRA5A6NI73 299 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 PRR19A6NJB7 356 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 SDR42E2A6NKP2 422 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 GOLGA8MH3BSY2 632 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 SNRNP200O75643 2136 aaKnown RBP12.75□□□□□ -0.37
CLK3-224ENST00000568605 EML2O95834 649 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 TUBB4AP04350 444 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 OR56A5P0C7T3 313 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 XRCC1P18887 633 aaPredicted RBP12.75□□□□□ -0.37
CLK3-224ENST00000568605 RPL10P27635 214 aaKnown RBP12.75□□□□□ -0.37
CLK3-224ENST00000568605 CCKBRP32239 447 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 CA5AP35218 305 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 DRG2P55039 364 aaKnown RBP12.75□□□□□ -0.37
CLK3-224ENST00000568605 CLDN6P56747 220 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 CCL7P80098 99 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 B4GALNT1Q00973 533 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 NFE2L1Q14494 772 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 MORF4L2Q15014 288 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 RNF187Q5TA31 235 aaPredicted RBP12.75□□□□□ -0.37
CLK3-224ENST00000568605 RNASEH2BQ5TBB1 312 aaKnown RBP12.75□□□□□ -0.37
CLK3-224ENST00000568605 IZUMO3Q5VZ72 239 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 KIAA0930Q6ICG6 404 aaPredicted RBP12.75□□□□□ -0.37
CLK3-224ENST00000568605 MRNIPQ6NTE8 343 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 PIM3Q86V86 326 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 JAMLQ86YT9 394 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 PIANPQ8IYJ0 282 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 NAT8LQ8N9F0 302 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 GABPB2Q8TAK5 448 aaPredicted RBP12.75□□□□□ -0.37
CLK3-224ENST00000568605 SNF8Q96H20 258 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 ZNF778Q96MU6 729 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 AKAP7Q9P0M2 348 aaPredicted RBP12.75□□□□□ -0.37
CLK3-224ENST00000568605 FAM8A1Q9UBU6 413 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 VPS9D1Q9Y2B5 631 aa12.75□□□□□ -0.37
CLK3-224ENST00000568605 PCM1Q15154 2024 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 TRBV23OR9-2A0A075B6M9 112 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 IGHV1OR21-1A0A087WYE8 117 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 CCDC187A0A096LP49 1063 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 FAM237BA0A1B0GVD1 139 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 A0A1W2PQM1 296 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 FANCGO15287 622 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 PPM1DO15297 605 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 CD3EAPO15446 510 aaKnown RBP12.74□□□□□ -0.37
CLK3-224ENST00000568605 NMBRP28336 390 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 PTGIRP43119 386 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 CDKN1CP49918 316 aaPredicted RBP12.74□□□□□ -0.37
CLK3-224ENST00000568605 INHBCP55103 352 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 UBE2IP63279 158 aaKnown RBP12.74□□□□□ -0.37
CLK3-224ENST00000568605 RPA4Q13156 261 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 AMZ1Q400G9 498 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 SYTL3Q4VX76 610 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 DNAJC21Q5F1R6 531 aaKnown RBP12.74□□□□□ -0.37
CLK3-224ENST00000568605 METRNLQ641Q3 311 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 MAATS1Q7Z4T9 603 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 CAND1Q86VP6 1230 aaKnown RBP12.74□□□□□ -0.37
CLK3-224ENST00000568605 LSMEM2Q8N112 164 aa12.74□□□□□ -0.37
CLK3-224ENST00000568605 BBOF1Q8ND07 529 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms