RNA–Protein interactions for RNA: ENST00000482171.5

SMPD4-218, Transcript of sphingomyelin phosphodiesterase 4, human

TSL 2

Gene SMPD4, Length 4,298 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMPD4-218	ENST00000482171	ZC3HC1	Q86WB0	502 aa	Known RBP	11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	PGAM4	Q8N0Y7	254 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	PHTF2	Q8N3S3	785 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	CLDN19	Q8N6F1	224 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	C2orf15	Q8WU43	125 aa	Known RBP	11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	SLC22A17	Q8WUG5	538 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	PNPLA8	Q9NP80	782 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	SNX8	Q9Y5X2	465 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	PHIP	Q8WWQ0	1821 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	TRAFD1	O14545	582 aa	Predicted RBP	11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	GABRD	O14764	452 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	COCH	O43405	550 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	MTX2	O75431	263 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	H6PD	O95479	791 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	COL6A2	P12110	1019 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	IL4R	P24394	825 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	PRKCH	P24723	683 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	PIK3R6	Q5UE93	754 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	TPGS2	Q68CL5	300 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	C8orf59	Q8N0T1	100 aa	Predicted RBP	11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	ATG16L2	Q8NAA4	619 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	FBXO30	Q8TB52	745 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	ACTRT2	Q8TDY3	377 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	PTCD3	Q96EY7	689 aa	Known RBP	11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	GPATCH1	Q9BRR8	931 aa	Known RBP	11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	ARMC7	Q9H6L4	198 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	RMND5A	Q9H871	391 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	MIEF1	Q9NQG6	463 aa		11.21	□□□□□ -0.62
SMPD4-218	ENST00000482171	COL4A5	P29400	1685 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171		H3BNX3	289 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	RGS14	O43566	566 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	FGF18	O76093	207 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	CDK14	O94921	469 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	PTPN2	P17706	415 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	ITGAX	P20702	1163 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	S100A3	P33764	101 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	CCR10	P46092	362 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	PPIG	Q13427	754 aa	Known RBP eCLIP	11.2	□□□□□ -0.62	9e-8	■■■□□ 17.2
SMPD4-218	ENST00000482171	PITRM1	Q5JRX3	1037 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	METTL21C	Q5VZV1	264 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	POC5	Q8NA72	575 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	ITFG1	Q8TB96	612 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	CXorf40A	Q8TE69	158 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	DENND1A	Q8TEH3	1009 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	DNAJC28	Q9NX36	388 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	ARIH1	Q9Y4X5	557 aa	Predicted RBP	11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	INSL5	Q9Y5Q6	135 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	SQOR	Q9Y6N5	450 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	BRWD3	Q6RI45	1802 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	C2orf78	A6NCI8	922 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	KLF11	O14901	512 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	MLYCD	O95822	493 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	MAPK1	P28482	360 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	INA	Q16352	499 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	PLEKHG4	Q58EX7	1191 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	SMYD5	Q6GMV2	418 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	LYSMD3	Q7Z3D4	306 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	SPPL2C	Q8IUH8	684 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	SYT12	Q8IV01	421 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	NRG4	Q8WWG1	115 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	IMPAD1	Q9NX62	359 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	CARNS1	A5YM72	827 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171		E7ESA3	106 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	CNP	P09543	421 aa	Known RBP	11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	DPYS	Q14117	519 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	PLA2G4E	Q3MJ16	856 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	UBE2R2	Q712K3	238 aa	Predicted RBP	11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	COLGALT2	Q8IYK4	626 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	CSGALNACT1	Q8TDX6	532 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	OXCT2	Q9BYC2	517 aa	Predicted RBP	11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	BRD9	Q9H8M2	597 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	COMMD8	Q9NX08	183 aa		11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	EIF2B4	Q9UI10	523 aa	Known RBP	11.2	□□□□□ -0.62
SMPD4-218	ENST00000482171	ABHD14A-ACY1	A0A1B0GW23	586 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	SEC24A	O95486	1093 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	EPHX1	P07099	455 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	PABPC4L	P0CB38	370 aa	Known RBP	11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	COL6A1	P12109	1028 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	CHI3L1	P36222	383 aa	Predicted RBP	11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	MRPL28	Q13084	256 aa	Known RBP	11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	SLC9B1	Q4ZJI4	515 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	PRMT9	Q6P2P2	845 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	KIAA1324	Q6UXG2	1013 aa	Known RBP	11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	PAQR9	Q6ZVX9	377 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	ARMCX6	Q7L4S7	300 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	ZNF557	Q8N988	423 aa	Predicted RBP	11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	CYB5D2	Q8WUJ1	264 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	FEM1C	Q96JP0	617 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	TSSK3	Q96PN8	268 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	MSRA	Q9UJ68	235 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	MTF2	Q9Y483	593 aa	Predicted RBP	11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	WNT6	Q9Y6F9	365 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	MCM3AP	O60318	1980 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	NRP2	O60462	931 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	CNOT3	O75175	753 aa	Known RBP	11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	RFPL1	O75677	317 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	SPAM1	P38567	509 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	ENTPD1	P49961	510 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	LSAMP	Q13449	338 aa		11.19	□□□□□ -0.62
SMPD4-218	ENST00000482171	SQLE	Q14534	574 aa		11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms