RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 DDX54Q8TDD1 881 aaKnown RBP36.18■■■■□ 3.38
VEGFA-231ENST00000640499 PPP2R1AP30153 589 aa36.16■■■■□ 3.38
VEGFA-231ENST00000640499 COL3A1P02461 1466 aaPredicted RBP36.16■■■■□ 3.38
VEGFA-231ENST00000640499 SF3B2Q13435 895 aaKnown RBP36.15■■■■□ 3.38
VEGFA-231ENST00000640499 AEBP1Q8IUX7 1158 aa36.13■■■■□ 3.37
VEGFA-231ENST00000640499 PARD3Q8TEW0 1356 aa36.13■■■■□ 3.37
VEGFA-231ENST00000640499 PKD1L3Q7Z443 1732 aa36.12■■■■□ 3.37
VEGFA-231ENST00000640499 KCNQ2O43526 872 aa36.11■■■■□ 3.37
VEGFA-231ENST00000640499 EN1Q05925 392 aaPredicted RBP36.11■■■■□ 3.37
VEGFA-231ENST00000640499 APBA3O96018 575 aa36.1■■■■□ 3.37
VEGFA-231ENST00000640499 BCL11BQ9C0K0 894 aaPredicted RBP36.09■■■■□ 3.37
VEGFA-231ENST00000640499 CYP27B1O15528 508 aa36.08■■■■□ 3.37
VEGFA-231ENST00000640499 BAG6P46379 1132 aa36.08■■■■□ 3.37
VEGFA-231ENST00000640499 ACSBG1Q96GR2 724 aa36.08■■■■□ 3.37
VEGFA-231ENST00000640499 DIAPH1O60610 1272 aaKnown RBP36.07■■■■□ 3.36
VEGFA-231ENST00000640499 CAMKK2Q96RR4 588 aa36.07■■■■□ 3.36
VEGFA-231ENST00000640499 KDRP35968 1356 aa36.06■■■■□ 3.36
VEGFA-231ENST00000640499 ZNF316A6NFI3 1004 aaPredicted RBP36.06■■■■□ 3.36
VEGFA-231ENST00000640499 SULT6B1Q6IMI4 303 aa36.06■■■■□ 3.36
VEGFA-231ENST00000640499 NHSQ6T4R5 1651 aa36.05■■■■□ 3.36
VEGFA-231ENST00000640499 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP36.04■■■■□ 3.367e-31■□□□□ 9.1
VEGFA-231ENST00000640499 EZH2Q15910 746 aaKnown RBP36.03■■■■□ 3.36
VEGFA-231ENST00000640499 PCDH11XQ9BZA7 1347 aa36.02■■■■□ 3.36
VEGFA-231ENST00000640499 PCDH11YQ9BZA8 1340 aa36.02■■■■□ 3.36
VEGFA-231ENST00000640499 SPG7Q9UQ90 795 aa36■■■■□ 3.35
VEGFA-231ENST00000640499 DOT1LQ8TEK3 1739 aa35.99■■■■□ 3.35
VEGFA-231ENST00000640499 PLEKHG2Q9H7P9 1386 aa35.98■■■■□ 3.35
VEGFA-231ENST00000640499 KAT6BQ8WYB5 2073 aa35.98■■■■□ 3.35
VEGFA-231ENST00000640499 HMOX1P09601 288 aa35.97■■■■□ 3.35
VEGFA-231ENST00000640499 NKX1-1Q15270 411 aaPredicted RBP35.97■■■■□ 3.35
VEGFA-231ENST00000640499 PLSCR1O15162 318 aa35.96■■■■□ 3.35
VEGFA-231ENST00000640499 PRIM1P49642 420 aaKnown RBP35.96■■■■□ 3.35
VEGFA-231ENST00000640499 BTAF1O14981 1849 aa35.94■■■■□ 3.34
VEGFA-231ENST00000640499 RALBP1Q15311 655 aa35.94■■■■□ 3.34
VEGFA-231ENST00000640499 PROM2Q8N271 834 aa35.94■■■■□ 3.34
VEGFA-231ENST00000640499 TOGARAM1Q9Y4F4 1720 aa35.94■■■■□ 3.34
VEGFA-231ENST00000640499 PHKG2P15735 406 aa35.93■■■■□ 3.34
VEGFA-231ENST00000640499 CFAP53Q96M91 514 aa35.93■■■■□ 3.34
VEGFA-231ENST00000640499 RREB1Q92766 1687 aa35.92■■■■□ 3.34
VEGFA-231ENST00000640499 RGPD3A6NKT7 1758 aaPredicted RBP35.92■■■■□ 3.34
VEGFA-231ENST00000640499 RGPD4Q7Z3J3 1758 aa35.92■■■■□ 3.34
VEGFA-231ENST00000640499 PLEKHO1Q53GL0 409 aaPredicted RBP35.91■■■■□ 3.34
VEGFA-231ENST00000640499 U2SURPO15042 1029 aaKnown RBP35.9■■■■□ 3.34
VEGFA-231ENST00000640499 IFNL2Q8IZJ0 200 aa35.9■■■■□ 3.34
VEGFA-231ENST00000640499 AMOTQ4VCS5 1084 aa35.88■■■■□ 3.33
VEGFA-231ENST00000640499 SYTL4Q96C24 671 aaPredicted RBP35.87■■■■□ 3.33
VEGFA-231ENST00000640499 NUP188Q5SRE5 1749 aa35.86■■■■□ 3.33
VEGFA-231ENST00000640499 ZNF530Q6P9A1 599 aaPredicted RBP35.85■■■■□ 3.33
VEGFA-231ENST00000640499 PRKRIP1Q9H875 184 aaPredicted RBP35.84■■■■□ 3.33
VEGFA-231ENST00000640499 ITGB4P16144 1822 aa35.84■■■■□ 3.33
VEGFA-231ENST00000640499 RSPH6AQ9H0K4 717 aa35.81■■■■□ 3.32
VEGFA-231ENST00000640499 TXNRD1Q16881 649 aa35.8■■■■□ 3.32
VEGFA-231ENST00000640499 MTHFSDQ2M296 383 aaKnown RBP35.8■■■■□ 3.32
VEGFA-231ENST00000640499 NUDCQ9Y266 331 aa35.8■■■■□ 3.32
VEGFA-231ENST00000640499 KDM6AO15550 1401 aaPredicted RBP35.8■■■■□ 3.32
VEGFA-231ENST00000640499 MYBBP1AQ9BQG0 1328 aaKnown RBP35.8■■■■□ 3.32
VEGFA-231ENST00000640499 MPRIPQ6WCQ1 1025 aa35.78■■■■□ 3.32
VEGFA-231ENST00000640499 PIGBQ92521 554 aa35.78■■■■□ 3.32
VEGFA-231ENST00000640499 U2AF1L5P0DN76 240 aaPredicted RBP35.77■■■■□ 3.32
VEGFA-231ENST00000640499 U2AF1Q01081 240 aaKnown RBP eCLIP35.77■■■■□ 3.322e-10■□□□□ 9.4
VEGFA-231ENST00000640499 PHACTR3Q96KR7 559 aa35.76■■■■□ 3.32
VEGFA-231ENST00000640499 DCAF5Q96JK2 942 aa35.75■■■■□ 3.31
VEGFA-231ENST00000640499 PRKAR2BP31323 418 aa35.74■■■■□ 3.31
VEGFA-231ENST00000640499 LRRC4BQ9NT99 713 aa35.74■■■■□ 3.31
VEGFA-231ENST00000640499 LY75O60449 1722 aa35.73■■■■□ 3.31
VEGFA-231ENST00000640499 HSP90AB1P08238 724 aaKnown RBP35.72■■■■□ 3.31
VEGFA-231ENST00000640499 AKAP4Q5JQC9 854 aa35.72■■■■□ 3.31
VEGFA-231ENST00000640499 C1orf141Q5JVX7 400 aa35.72■■■■□ 3.31
VEGFA-231ENST00000640499 ANO8Q9HCE9 1232 aaPredicted RBP35.71■■■■□ 3.31
VEGFA-231ENST00000640499 PSDA5PKW4 1024 aaPredicted RBP35.7■■■■□ 3.31
VEGFA-231ENST00000640499 FCHSD2O94868 740 aa35.7■■■■□ 3.31
VEGFA-231ENST00000640499 ERVV-2B6SEH9 535 aa35.69■■■■□ 3.3
VEGFA-231ENST00000640499 KCNQ4P56696 695 aa35.69■■■■□ 3.3
VEGFA-231ENST00000640499 LGR6Q9HBX8 967 aa35.69■■■■□ 3.3
VEGFA-231ENST00000640499 R3HDM1Q15032 1099 aaKnown RBP35.68■■■■□ 3.3
VEGFA-231ENST00000640499 SCN11AQ9UI33 1791 aa35.68■■■■□ 3.3
VEGFA-231ENST00000640499 TMOD3Q9NYL9 352 aa35.67■■■■□ 3.3
VEGFA-231ENST00000640499 PAPPAQ13219 1627 aa35.66■■■■□ 3.3
VEGFA-231ENST00000640499 ADAMTS7Q9UKP4 1686 aa35.65■■■■□ 3.3
VEGFA-231ENST00000640499 ASAP1Q9ULH1 1129 aa35.65■■■■□ 3.3
VEGFA-231ENST00000640499 SLC27A3Q5K4L6 730 aa35.63■■■■□ 3.29
VEGFA-231ENST00000640499 NBPF14Q5TI25 921 aa35.63■■■■□ 3.29
VEGFA-231ENST00000640499 PLEKHF1Q96S99 279 aa35.63■■■■□ 3.29
VEGFA-231ENST00000640499 ATG3Q9NT62 314 aa35.63■■■■□ 3.29
VEGFA-231ENST00000640499 PALLDQ8WX93 1383 aa35.63■■■■□ 3.29
VEGFA-231ENST00000640499 VIRMAQ69YN4 1812 aaKnown RBP35.62■■■■□ 3.29
VEGFA-231ENST00000640499 RNMTO43148 476 aaKnown RBP35.62■■■■□ 3.29
VEGFA-231ENST00000640499 GAS2L2Q8NHY3 880 aa35.61■■■■□ 3.29
VEGFA-231ENST00000640499 CABP4P57796 275 aa35.6■■■■□ 3.29
VEGFA-231ENST00000640499 NFATC2IPQ8NCF5 419 aa35.6■■■■□ 3.29
VEGFA-231ENST00000640499 IL17REQ8NFR9 667 aa35.58■■■■□ 3.29
VEGFA-231ENST00000640499 SMARCC1Q92922 1105 aaPredicted RBP35.58■■■■□ 3.29
VEGFA-231ENST00000640499 CCNL1Q9UK58 526 aaPredicted RBP35.58■■■■□ 3.29
VEGFA-231ENST00000640499 MAP3K5Q99683 1374 aa35.57■■■■□ 3.28
VEGFA-231ENST00000640499 MRC1P22897 1456 aa35.56■■■■□ 3.28
VEGFA-231ENST00000640499 ZNF827Q17R98 1081 aa35.56■■■■□ 3.28
VEGFA-231ENST00000640499 CCDC184Q52MB2 194 aa35.56■■■■□ 3.28
VEGFA-231ENST00000640499 GNAT3A8MTJ3 354 aa35.55■■■■□ 3.28
VEGFA-231ENST00000640499 SLC15A2Q16348 729 aa35.55■■■■□ 3.28
VEGFA-231ENST00000640499 SLC52A2Q9HAB3 445 aa35.55■■■■□ 3.28
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms