RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ZNF827Q17R98 1081 aa24.41■■□□□ 1.5
CLN3-247ENST00000636351 SGIP1Q9BQI5 828 aa24.41■■□□□ 1.5
CLN3-247ENST00000636351 LRRC4BQ9NT99 713 aa24.41■■□□□ 1.5
CLN3-247ENST00000636351 FYB1O15117 783 aa24.4■■□□□ 1.5
CLN3-247ENST00000636351 HOXC9P31274 260 aa24.4■■□□□ 1.5
CLN3-247ENST00000636351 SYT17Q9BSW7 474 aa24.4■■□□□ 1.5
CLN3-247ENST00000636351 AMPHP49418 695 aa24.39■■□□□ 1.49
CLN3-247ENST00000636351 KNSTRNQ9Y448 316 aa24.38■■□□□ 1.49
CLN3-247ENST00000636351 SYTL4Q96C24 671 aaPredicted RBP24.36■■□□□ 1.49
CLN3-247ENST00000636351 ARXQ96QS3 562 aa24.35■■□□□ 1.49
CLN3-247ENST00000636351 PRIM1P49642 420 aaKnown RBP24.34■■□□□ 1.49
CLN3-247ENST00000636351 RRS1Q15050 365 aaKnown RBP24.34■■□□□ 1.49
CLN3-247ENST00000636351 SLC27A3Q5K4L6 730 aa24.34■■□□□ 1.49
CLN3-247ENST00000636351 AKT1S1Q96B36 256 aa24.34■■□□□ 1.49
CLN3-247ENST00000636351 MEGF6O75095 1541 aa24.34■■□□□ 1.49
CLN3-247ENST00000636351 RTL1A6NKG5 1358 aa24.33■■□□□ 1.49
CLN3-247ENST00000636351 DOT1LQ8TEK3 1739 aa24.32■■□□□ 1.48
CLN3-247ENST00000636351 ZCRB1Q8TBF4 217 aaKnown RBP24.32■■□□□ 1.48
CLN3-247ENST00000636351 NSD2O96028 1365 aa24.31■■□□□ 1.48
CLN3-247ENST00000636351 KCNQ4P56696 695 aa24.31■■□□□ 1.48
CLN3-247ENST00000636351 KAT6BQ8WYB5 2073 aa24.31■■□□□ 1.48
CLN3-247ENST00000636351 RGPD2P0DJD1 1756 aa24.31■■□□□ 1.48
CLN3-247ENST00000636351 UTRNP46939 3433 aa24.31■■□□□ 1.48
CLN3-247ENST00000636351 SHANK3Q9BYB0 1731 aa24.3■■□□□ 1.48
CLN3-247ENST00000636351 NBPF6Q5VWK0 638 aa24.29■■□□□ 1.48
CLN3-247ENST00000636351 USHBP1Q8N6Y0 703 aa24.29■■□□□ 1.48
CLN3-247ENST00000636351 NBPF4Q96M43 638 aa24.29■■□□□ 1.48
CLN3-247ENST00000636351 ANKRD26Q9UPS8 1709 aa24.29■■□□□ 1.48
CLN3-247ENST00000636351 PNPLA7Q6ZV29 1317 aa24.29■■□□□ 1.48
CLN3-247ENST00000636351 MAP3K5Q99683 1374 aa24.29■■□□□ 1.48
CLN3-247ENST00000636351 SMG6Q86US8 1419 aaKnown RBP24.27■■□□□ 1.48
CLN3-247ENST00000636351 SLC16A10Q8TF71 515 aa24.27■■□□□ 1.48
CLN3-247ENST00000636351 TFCP2L1Q9NZI6 479 aa24.27■■□□□ 1.48
CLN3-247ENST00000636351 TNNT2P45379 298 aaPredicted RBP24.26■■□□□ 1.47
CLN3-247ENST00000636351 QSER1Q2KHR3 1735 aa24.26■■□□□ 1.47
CLN3-247ENST00000636351 CNGB1Q14028 1251 aaPredicted RBP24.25■■□□□ 1.47
CLN3-247ENST00000636351 LY75O60449 1722 aa24.24■■□□□ 1.47
CLN3-247ENST00000636351 POLD1P28340 1107 aa24.24■■□□□ 1.47
CLN3-247ENST00000636351 AMER1Q5JTC6 1135 aaPredicted RBP24.24■■□□□ 1.47
CLN3-247ENST00000636351 MORC1Q86VD1 984 aa24.24■■□□□ 1.47
CLN3-247ENST00000636351 KLHL34Q8N239 644 aa24.24■■□□□ 1.47
CLN3-247ENST00000636351 ZNF784Q8NCA9 323 aaPredicted RBP24.24■■□□□ 1.47
CLN3-247ENST00000636351 RAPGEF4Q8WZA2 1011 aa24.24■■□□□ 1.47
CLN3-247ENST00000636351 CC2D1BQ5T0F9 858 aaKnown RBP24.23■■□□□ 1.47
CLN3-247ENST00000636351 CCNL1Q9UK58 526 aaPredicted RBP24.23■■□□□ 1.47
CLN3-247ENST00000636351 TUBGCP6Q96RT7 1819 aa24.22■■□□□ 1.47
CLN3-247ENST00000636351 PER1O15534 1290 aaPredicted RBP24.22■■□□□ 1.47
CLN3-247ENST00000636351 HSP90AB2PQ58FF8 381 aa24.22■■□□□ 1.47
CLN3-247ENST00000636351 INSRP06213 1382 aa24.21■■□□□ 1.47
CLN3-247ENST00000636351 TATP17735 454 aaPredicted RBP24.21■■□□□ 1.47
CLN3-247ENST00000636351 FLT4P35916 1363 aa24.2■■□□□ 1.46
CLN3-247ENST00000636351 PPM1GO15355 546 aaPredicted RBP24.2■■□□□ 1.46
CLN3-247ENST00000636351 EMILIN1Q9Y6C2 1016 aa24.19■■□□□ 1.46
CLN3-247ENST00000636351 COL24A1Q17RW2 1714 aa24.18■■□□□ 1.46
CLN3-247ENST00000636351 GPR162Q16538 588 aa24.18■■□□□ 1.46
CLN3-247ENST00000636351 KIF24Q5T7B8 1368 aa24.17■■□□□ 1.46
CLN3-247ENST00000636351 PCDH11XQ9BZA7 1347 aa24.17■■□□□ 1.46
CLN3-247ENST00000636351 PCDH11YQ9BZA8 1340 aa24.17■■□□□ 1.46
CLN3-247ENST00000636351 DDX10Q13206 875 aaKnown RBP24.17■■□□□ 1.46
CLN3-247ENST00000636351 MSH5O43196 834 aa24.16■■□□□ 1.46
CLN3-247ENST00000636351 NPC1L1Q9UHC9 1359 aa24.16■■□□□ 1.46
CLN3-247ENST00000636351 ZNF316A6NFI3 1004 aaPredicted RBP24.14■■□□□ 1.45
CLN3-247ENST00000636351 COL23A1Q86Y22 540 aaPredicted RBP24.14■■□□□ 1.45
CLN3-247ENST00000636351 PELP1Q8IZL8 1130 aaKnown RBP24.14■■□□□ 1.45
CLN3-247ENST00000636351 NLGN2Q8NFZ4 835 aa24.14■■□□□ 1.45
CLN3-247ENST00000636351 MAP2P11137 1827 aaKnown RBP24.13■■□□□ 1.45
CLN3-247ENST00000636351 POLKQ9UBT6 870 aa24.13■■□□□ 1.45
CLN3-247ENST00000636351 CHD4Q14839 1912 aa24.12■■□□□ 1.45
CLN3-247ENST00000636351 CYP27B1O15528 508 aa24.12■■□□□ 1.45
CLN3-247ENST00000636351 MPRIPQ6WCQ1 1025 aa24.12■■□□□ 1.45
CLN3-247ENST00000636351 PALLDQ8WX93 1383 aa24.12■■□□□ 1.45
CLN3-247ENST00000636351 C5P01031 1676 aa24.11■■□□□ 1.45
CLN3-247ENST00000636351 MSL1Q68DK7 614 aa24.1■■□□□ 1.45
CLN3-247ENST00000636351 TOGARAM1Q9Y4F4 1720 aa24.08■■□□□ 1.45
CLN3-247ENST00000636351 NCAPD2Q15021 1401 aa24.07■■□□□ 1.44
CLN3-247ENST00000636351 PKD1L3Q7Z443 1732 aa24.07■■□□□ 1.44
CLN3-247ENST00000636351 GOLGB1Q14789 3259 aaKnown RBP24.04■■□□□ 1.44
CLN3-247ENST00000636351 SMARCC1Q92922 1105 aaPredicted RBP24.04■■□□□ 1.44
CLN3-247ENST00000636351 HMGB2P26583 209 aaKnown RBP24.03■■□□□ 1.44
CLN3-247ENST00000636351 FLAD1Q8NFF5 587 aa24.03■■□□□ 1.44
CLN3-247ENST00000636351 SPG7Q9UQ90 795 aa24.03■■□□□ 1.44
CLN3-247ENST00000636351 C4BP0C0L5 1744 aa24.02■■□□□ 1.44
CLN3-247ENST00000636351 YBX3P16989 372 aaKnown RBP eCLIP24.02■■□□□ 1.44
CLN3-247ENST00000636351 PIGBQ92521 554 aa24.02■■□□□ 1.44
CLN3-247ENST00000636351 TAF1LQ8IZX4 1826 aa24.02■■□□□ 1.44
CLN3-247ENST00000636351 ITGB4P16144 1822 aa24.01■■□□□ 1.43
CLN3-247ENST00000636351 MTHFSP49914 203 aa24.01■■□□□ 1.43
CLN3-247ENST00000636351 C1QTNF8P60827 252 aa24.01■■□□□ 1.43
CLN3-247ENST00000636351 NKX1-1Q15270 411 aaPredicted RBP24.01■■□□□ 1.43
CLN3-247ENST00000636351 AK7Q96M32 723 aa24.01■■□□□ 1.43
CLN3-247ENST00000636351 EYA1Q99502 592 aa24.01■■□□□ 1.43
CLN3-247ENST00000636351 EIF4A2Q14240 407 aaKnown RBP24■■□□□ 1.43
CLN3-247ENST00000636351 AMIGO3Q86WK7 504 aa24■■□□□ 1.43
CLN3-247ENST00000636351 GRIN3BO60391 1043 aa23.98■■□□□ 1.43
CLN3-247ENST00000636351 PHF14O94880 888 aa23.98■■□□□ 1.43
CLN3-247ENST00000636351 SENP3-EIF4A1A0A087X0R7 540 aa23.97■■□□□ 1.43
CLN3-247ENST00000636351 SMIM5Q71RC9 77 aa23.97■■□□□ 1.43
CLN3-247ENST00000636351 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.96■■□□□ 1.43
CLN3-247ENST00000636351 TMOD3Q9NYL9 352 aa23.96■■□□□ 1.43
CLN3-247ENST00000636351 CD2APQ9Y5K6 639 aa23.96■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms