RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, human

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-244	ENST00000636147	LETM1	O95202	739 aa	Predicted RBP	13.23	□□□□□ -0.29
CLN3-244	ENST00000636147	CCDC94	Q9BW85	323 aa	Predicted RBP	13.23	□□□□□ -0.29
CLN3-244	ENST00000636147	IL16	Q14005	1332 aa		13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	LMOD2	Q6P5Q4	547 aa		13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	PLA2R1	Q13018	1463 aa		13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	HTATSF1	O43719	755 aa	Known RBP	13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	MX1	P20591	662 aa		13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	STK3	Q13188	491 aa		13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	JARID2	Q92833	1246 aa	Predicted RBP	13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	C14orf93	Q9H972	538 aa	Known RBP	13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	LRRIQ1	Q96JM4	1722 aa		13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	GADD45B	O75293	160 aa	Predicted RBP	13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	FILIP1	Q7Z7B0	1213 aa		13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	DCTPP1	Q9H773	170 aa		13.22	□□□□□ -0.29
CLN3-244	ENST00000636147	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.21	□□□□□ -0.29
CLN3-244	ENST00000636147	CCAR2	Q8N163	923 aa	Known RBP	13.21	□□□□□ -0.29
CLN3-244	ENST00000636147	PRIMPOL	Q96LW4	560 aa		13.21	□□□□□ -0.29
CLN3-244	ENST00000636147	SHANK2	Q9UPX8	1470 aa		13.21	□□□□□ -0.3
CLN3-244	ENST00000636147	GNAI3	P08754	354 aa		13.21	□□□□□ -0.3
CLN3-244	ENST00000636147	LARP1B	Q659C4	914 aa	Known RBP	13.21	□□□□□ -0.3
CLN3-244	ENST00000636147	NME9	Q86XW9	330 aa		13.21	□□□□□ -0.3
CLN3-244	ENST00000636147	HOMER1	Q86YM7	354 aa		13.21	□□□□□ -0.3
CLN3-244	ENST00000636147	GPATCH3	Q96I76	525 aa		13.21	□□□□□ -0.3
CLN3-244	ENST00000636147	FMNL2	Q96PY5	1086 aa		13.21	□□□□□ -0.3
CLN3-244	ENST00000636147	TNMD	Q9H2S6	317 aa		13.21	□□□□□ -0.3
CLN3-244	ENST00000636147	ZNF500	O60304	480 aa	Predicted RBP	13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	GORAB	Q5T7V8	394 aa		13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	WAPL	Q7Z5K2	1190 aa		13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	RUFY2	Q8WXA3	655 aa		13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	TRERF1	Q96PN7	1200 aa		13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	PDE1A	P54750	535 aa		13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	SF3A1	Q15459	793 aa	Known RBP	13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	ANKRD44	Q8N8A2	993 aa		13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	IFIT2	P09913	472 aa	Known RBP	13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	CAST	P20810	708 aa	Known RBP	13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	JAKMIP1	Q96N16	626 aa	Known RBP	13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	SPG7	Q9UQ90	795 aa		13.2	□□□□□ -0.3
CLN3-244	ENST00000636147	KIF21A	Q7Z4S6	1674 aa		13.19	□□□□□ -0.3
CLN3-244	ENST00000636147	TPM3	P06753	285 aa		13.19	□□□□□ -0.3
CLN3-244	ENST00000636147	AEBP2	Q6ZN18	517 aa	Predicted RBP	13.19	□□□□□ -0.3
CLN3-244	ENST00000636147	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.19	□□□□□ -0.3
CLN3-244	ENST00000636147	ARHGAP45	Q92619	1136 aa		13.19	□□□□□ -0.3
CLN3-244	ENST00000636147	TFIP11	Q9UBB9	837 aa	Known RBP	13.19	□□□□□ -0.3
CLN3-244	ENST00000636147	GNL2	Q13823	731 aa	Known RBP	13.19	□□□□□ -0.3
CLN3-244	ENST00000636147	NUP62CL	Q9H1M0	184 aa		13.19	□□□□□ -0.3
CLN3-244	ENST00000636147	KDM5D	Q9BY66	1539 aa		13.18	□□□□□ -0.3
CLN3-244	ENST00000636147	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.18	□□□□□ -0.3
CLN3-244	ENST00000636147	TERF1	P54274	439 aa		13.18	□□□□□ -0.3
CLN3-244	ENST00000636147	CNTROB	Q8N137	903 aa		13.18	□□□□□ -0.3
CLN3-244	ENST00000636147	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.18	□□□□□ -0.3
CLN3-244	ENST00000636147	STX6	O43752	255 aa		13.18	□□□□□ -0.3
CLN3-244	ENST00000636147	TNNT1	P13805	278 aa		13.18	□□□□□ -0.3
CLN3-244	ENST00000636147	KRT85	P78386	507 aa		13.18	□□□□□ -0.3
CLN3-244	ENST00000636147	U2AF2	P26368	475 aa	Known RBP eCLIP	13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	13.17	□□□□□ -0.3
CLN3-244	ENST00000636147		V9GYY5	206 aa	Predicted RBP	13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	ADAMTS12	P58397	1594 aa		13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	ABCC2	Q92887	1545 aa		13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	CCT4	P50991	539 aa	Known RBP	13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	CEP85	Q6P2H3	762 aa		13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	NGDN	Q8NEJ9	315 aa	Known RBP	13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	KIF2C	Q99661	725 aa		13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	TRMT1	Q9NXH9	659 aa	Known RBP	13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	MAP3K11	Q16584	847 aa		13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	MYRIP	Q8NFW9	859 aa		13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	ESYT1	Q9BSJ8	1104 aa		13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	ZRANB1	Q9UGI0	708 aa		13.17	□□□□□ -0.3
CLN3-244	ENST00000636147	TRAPPC8	Q9Y2L5	1435 aa		13.16	□□□□□ -0.3
CLN3-244	ENST00000636147	ZMYM3	Q14202	1370 aa		13.16	□□□□□ -0.3
CLN3-244	ENST00000636147	CYP46A1	Q9Y6A2	500 aa		13.16	□□□□□ -0.3
CLN3-244	ENST00000636147	CCDC186	Q7Z3E2	898 aa		13.16	□□□□□ -0.3
CLN3-244	ENST00000636147	SIRT2	Q8IXJ6	389 aa		13.16	□□□□□ -0.3
CLN3-244	ENST00000636147	SRGAP3	O43295	1099 aa		13.16	□□□□□ -0.3
CLN3-244	ENST00000636147	CPA1	P15085	419 aa		13.16	□□□□□ -0.3
CLN3-244	ENST00000636147	TXNDC2	Q86VQ3	553 aa		13.16	□□□□□ -0.3
CLN3-244	ENST00000636147	PDRG1	Q9NUG6	133 aa		13.16	□□□□□ -0.3
CLN3-244	ENST00000636147	PTPRT	O14522	1441 aa		13.16	□□□□□ -0.3
CLN3-244	ENST00000636147	ANKRD36B	Q8N2N9	1353 aa		13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	DNM1	Q05193	864 aa	Known RBP	13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	NUTM2G	Q5VZR2	741 aa		13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	PRPF40B	Q6NWY9	871 aa	Known RBP	13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	UBE2H	P62256	183 aa		13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	CLASRP	Q8N2M8	674 aa	Known RBP	13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	POLK	Q9UBT6	870 aa		13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	LRRFIP2	Q9Y608	721 aa	Known RBP	13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	CEP170	Q5SW79	1584 aa		13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	NECAB1	Q8N987	351 aa		13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	SPATA32	Q96LK8	384 aa		13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	SDF4	Q9BRK5	362 aa		13.15	□□□□□ -0.3
CLN3-244	ENST00000636147	PPIP5K1	Q6PFW1	1433 aa		13.14	□□□□□ -0.31
CLN3-244	ENST00000636147	PTGS1	P23219	599 aa		13.14	□□□□□ -0.31
CLN3-244	ENST00000636147	AEBP1	Q8IUX7	1158 aa		13.14	□□□□□ -0.31
CLN3-244	ENST00000636147	TCEANC2	Q96MN5	208 aa		13.14	□□□□□ -0.31
CLN3-244	ENST00000636147	LIMCH1	Q9UPQ0	1083 aa		13.14	□□□□□ -0.31
CLN3-244	ENST00000636147	POLR1A	O95602	1720 aa	Predicted RBP	13.14	□□□□□ -0.31
CLN3-244	ENST00000636147	ADGB	Q8N7X0	1667 aa		13.14	□□□□□ -0.31
CLN3-244	ENST00000636147	RIOK3	O14730	519 aa	Known RBP	13.14	□□□□□ -0.31
CLN3-244	ENST00000636147	UVSSA	Q2YD98	709 aa		13.14	□□□□□ -0.31
CLN3-244	ENST00000636147	CCDC73	Q6ZRK6	1079 aa		13.14	□□□□□ -0.31
CLN3-244	ENST00000636147	PIBF1	Q8WXW3	757 aa		13.14	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms