RNA–Protein interactions for RNA: ENST00000628696.2

SMN2-215, Transcript of survival of motor neuron 2, centromeric, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SMN2, Length 885 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMN2-215ENST00000628696 DOT1LQ8TEK3 1739 aa26.53■■□□□ 1.84
SMN2-215ENST00000628696 NBPF6Q5VWK0 638 aa26.52■■□□□ 1.84
SMN2-215ENST00000628696 USHBP1Q8N6Y0 703 aa26.52■■□□□ 1.84
SMN2-215ENST00000628696 NBPF4Q96M43 638 aa26.52■■□□□ 1.84
SMN2-215ENST00000628696 MEGF6O75095 1541 aa26.51■■□□□ 1.83
SMN2-215ENST00000628696 RTL1A6NKG5 1358 aa26.5■■□□□ 1.83
SMN2-215ENST00000628696 TFCP2L1Q9NZI6 479 aa26.5■■□□□ 1.83
SMN2-215ENST00000628696 SHANK3Q9BYB0 1731 aa26.5■■□□□ 1.83
SMN2-215ENST00000628696 TRIM26Q12899 539 aaPredicted RBP26.49■■□□□ 1.83
SMN2-215ENST00000628696 KLHL34Q8N239 644 aa26.48■■□□□ 1.83
SMN2-215ENST00000628696 SLC16A10Q8TF71 515 aa26.48■■□□□ 1.83
SMN2-215ENST00000628696 RAPGEF4Q8WZA2 1011 aa26.48■■□□□ 1.83
SMN2-215ENST00000628696 SMG6Q86US8 1419 aaKnown RBP26.48■■□□□ 1.83
SMN2-215ENST00000628696 CDCA8Q53HL2 280 aa26.47■■□□□ 1.83
SMN2-215ENST00000628696 PNPLA7Q6ZV29 1317 aa26.46■■□□□ 1.83
SMN2-215ENST00000628696 QSER1Q2KHR3 1735 aa26.46■■□□□ 1.83
SMN2-215ENST00000628696 NSD2O96028 1365 aa26.46■■□□□ 1.83
SMN2-215ENST00000628696 KIF20BQ96Q89 1820 aa26.45■■□□□ 1.82
SMN2-215ENST00000628696 TATP17735 454 aaPredicted RBP26.45■■□□□ 1.82
SMN2-215ENST00000628696 POLD1P28340 1107 aa26.45■■□□□ 1.82
SMN2-215ENST00000628696 HSP90AB2PQ58FF8 381 aa26.45■■□□□ 1.82
SMN2-215ENST00000628696 CCNL1Q9UK58 526 aaPredicted RBP26.45■■□□□ 1.82
SMN2-215ENST00000628696 LY75O60449 1722 aa26.45■■□□□ 1.82
SMN2-215ENST00000628696 CGNL1Q0VF96 1302 aa26.44■■□□□ 1.82
SMN2-215ENST00000628696 CHD4Q14839 1912 aa26.44■■□□□ 1.82
SMN2-215ENST00000628696 TUBGCP6Q96RT7 1819 aa26.44■■□□□ 1.82
SMN2-215ENST00000628696 MAP3K5Q99683 1374 aa26.42■■□□□ 1.82
SMN2-215ENST00000628696 MSH5O43196 834 aa26.41■■□□□ 1.82
SMN2-215ENST00000628696 GPR162Q16538 588 aa26.41■■□□□ 1.82
SMN2-215ENST00000628696 ZNF784Q8NCA9 323 aaPredicted RBP26.41■■□□□ 1.82
SMN2-215ENST00000628696 INSRP06213 1382 aa26.41■■□□□ 1.82
SMN2-215ENST00000628696 FLT4P35916 1363 aa26.39■■□□□ 1.82
SMN2-215ENST00000628696 CARD14Q9BXL6 1004 aa26.38■■□□□ 1.81
SMN2-215ENST00000628696 PELP1Q8IZL8 1130 aaKnown RBP26.37■■□□□ 1.81
SMN2-215ENST00000628696 PCDH11XQ9BZA7 1347 aa26.37■■□□□ 1.81
SMN2-215ENST00000628696 PCDH11YQ9BZA8 1340 aa26.37■■□□□ 1.81
SMN2-215ENST00000628696 PPM1GO15355 546 aaPredicted RBP26.36■■□□□ 1.81
SMN2-215ENST00000628696 EMILIN1Q9Y6C2 1016 aa26.36■■□□□ 1.81
SMN2-215ENST00000628696 UTRNP46939 3433 aa26.36■■□□□ 1.81
SMN2-215ENST00000628696 COL24A1Q17RW2 1714 aa26.35■■□□□ 1.81
SMN2-215ENST00000628696 NSD3Q9BZ95 1437 aa26.35■■□□□ 1.81
SMN2-215ENST00000628696 KIF24Q5T7B8 1368 aa26.34■■□□□ 1.81
SMN2-215ENST00000628696 MPRIPQ6WCQ1 1025 aa26.34■■□□□ 1.81
SMN2-215ENST00000628696 COL23A1Q86Y22 540 aaPredicted RBP26.34■■□□□ 1.81
SMN2-215ENST00000628696 CYP27B1O15528 508 aa26.31■■□□□ 1.8
SMN2-215ENST00000628696 NLGN2Q8NFZ4 835 aa26.31■■□□□ 1.8
SMN2-215ENST00000628696 MSL1Q68DK7 614 aa26.3■■□□□ 1.8
SMN2-215ENST00000628696 POLR3GLQ9BT43 218 aa26.3■■□□□ 1.8
SMN2-215ENST00000628696 C5P01031 1676 aa26.29■■□□□ 1.8
SMN2-215ENST00000628696 MAP2P11137 1827 aaKnown RBP26.29■■□□□ 1.8
SMN2-215ENST00000628696 PALLDQ8WX93 1383 aa26.29■■□□□ 1.8
SMN2-215ENST00000628696 ITGB4P16144 1822 aa26.28■■□□□ 1.8
SMN2-215ENST00000628696 TAF1LQ8IZX4 1826 aa26.26■■□□□ 1.79
SMN2-215ENST00000628696 HMGB2P26583 209 aaKnown RBP26.26■■□□□ 1.79
SMN2-215ENST00000628696 SMARCC1Q92922 1105 aaPredicted RBP26.25■■□□□ 1.79
SMN2-215ENST00000628696 PCGF6Q9BYE7 350 aa26.25■■□□□ 1.79
SMN2-215ENST00000628696 TIMELESSQ9UNS1 1208 aa26.25■■□□□ 1.79
SMN2-215ENST00000628696 SPG7Q9UQ90 795 aa26.25■■□□□ 1.79
SMN2-215ENST00000628696 TOGARAM1Q9Y4F4 1720 aa26.25■■□□□ 1.79
SMN2-215ENST00000628696 PKD1L3Q7Z443 1732 aa26.24■■□□□ 1.79
SMN2-215ENST00000628696 WASHC2AQ641Q2 1341 aa26.23■■□□□ 1.79
SMN2-215ENST00000628696 FLAD1Q8NFF5 587 aa26.23■■□□□ 1.79
SMN2-215ENST00000628696 PIGBQ92521 554 aa26.22■■□□□ 1.79
SMN2-215ENST00000628696 EYA1Q99502 592 aa26.22■■□□□ 1.79
SMN2-215ENST00000628696 TNNT2P45379 298 aaPredicted RBP26.21■■□□□ 1.79
SMN2-215ENST00000628696 AK7Q96M32 723 aa26.21■■□□□ 1.79
SMN2-215ENST00000628696 ANKRD26Q9UPS8 1709 aa26.2■■□□□ 1.79
SMN2-215ENST00000628696 NKX1-1Q15270 411 aaPredicted RBP26.2■■□□□ 1.78
SMN2-215ENST00000628696 POLKQ9UBT6 870 aa26.2■■□□□ 1.78
SMN2-215ENST00000628696 C4BP0C0L5 1744 aa26.19■■□□□ 1.78
SMN2-215ENST00000628696 PHF14O94880 888 aa26.18■■□□□ 1.78
SMN2-215ENST00000628696 YBX3P16989 372 aaKnown RBP eCLIP26.18■■□□□ 1.78
SMN2-215ENST00000628696 NCAPD2Q15021 1401 aa26.18■■□□□ 1.78
SMN2-215ENST00000628696 GRIN3BO60391 1043 aa26.17■■□□□ 1.78
SMN2-215ENST00000628696 SMIM5Q71RC9 77 aa26.17■■□□□ 1.78
SMN2-215ENST00000628696 TMOD3Q9NYL9 352 aa26.17■■□□□ 1.78
SMN2-215ENST00000628696 C1QTNF8P60827 252 aa26.16■■□□□ 1.78
SMN2-215ENST00000628696 AMIGO3Q86WK7 504 aa26.15■■□□□ 1.78
SMN2-215ENST00000628696 IFNL2Q8IZJ0 200 aa26.15■■□□□ 1.78
SMN2-215ENST00000628696 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.15■■□□□ 1.78
SMN2-215ENST00000628696 LOC102724428A0A0B4J2F2 783 aa26.14■■□□□ 1.78
SMN2-215ENST00000628696 SIK1P57059 783 aa26.14■■□□□ 1.78
SMN2-215ENST00000628696 CD2APQ9Y5K6 639 aa26.14■■□□□ 1.78
SMN2-215ENST00000628696 UBR3Q6ZT12 1888 aa26.13■■□□□ 1.77
SMN2-215ENST00000628696 SENP3-EIF4A1A0A087X0R7 540 aa26.13■■□□□ 1.77
SMN2-215ENST00000628696 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP26.13■■□□□ 1.77
SMN2-215ENST00000628696 PHKG2P15735 406 aa26.13■■□□□ 1.77
SMN2-215ENST00000628696 EIF4A2Q14240 407 aaKnown RBP26.13■■□□□ 1.77
SMN2-215ENST00000628696 ASAP1Q9ULH1 1129 aa26.13■■□□□ 1.77
SMN2-215ENST00000628696 GOLGB1Q14789 3259 aaKnown RBP26.13■■□□□ 1.77
SMN2-215ENST00000628696 CLSPNQ9HAW4 1339 aa26.13■■□□□ 1.77
SMN2-215ENST00000628696 LINC00116Q8NCU8 138 aa26.12■■□□□ 1.77
SMN2-215ENST00000628696 GIGYF1O75420 1035 aaPredicted RBP26.1■■□□□ 1.77
SMN2-215ENST00000628696 ATP6V1AP38606 617 aa26.1■■□□□ 1.77
SMN2-215ENST00000628696 EIF4G2P78344 907 aaKnown RBP eCLIP26.09■■□□□ 1.77
SMN2-215ENST00000628696 PANK3Q9H999 370 aa26.09■■□□□ 1.77
SMN2-215ENST00000628696 HSPA5P11021 654 aaKnown RBP26.08■■□□□ 1.77
SMN2-215ENST00000628696 SSFA2P28290 1259 aa26.08■■□□□ 1.77
SMN2-215ENST00000628696 ITPK1Q13572 414 aa26.08■■□□□ 1.77
SMN2-215ENST00000628696 GNPATO15228 680 aa26.07■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms