RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 AEBP1Q8IUX7 1158 aa25.55■■□□□ 1.68
SQSTM1-216ENST00000626660 ZCRB1Q8TBF4 217 aaKnown RBP25.55■■□□□ 1.68
SQSTM1-216ENST00000626660 KDRP35968 1356 aa25.55■■□□□ 1.68
SQSTM1-216ENST00000626660 HMOX1P09601 288 aa25.54■■□□□ 1.68
SQSTM1-216ENST00000626660 PLEKHG2Q9H7P9 1386 aa25.54■■□□□ 1.68
SQSTM1-216ENST00000626660 U2AF1L5P0DN76 240 aaPredicted RBP25.53■■□□□ 1.68
SQSTM1-216ENST00000626660 U2AF1Q01081 240 aaKnown RBP eCLIP25.53■■□□□ 1.68
SQSTM1-216ENST00000626660 DIEXFQ68CQ4 756 aaKnown RBP25.51■■□□□ 1.67
SQSTM1-216ENST00000626660 SPG7Q9UQ90 795 aa25.51■■□□□ 1.67
SQSTM1-216ENST00000626660 PKD1L3Q7Z443 1732 aa25.51■■□□□ 1.67
SQSTM1-216ENST00000626660 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.5■■□□□ 1.67
SQSTM1-216ENST00000626660 PLEKHO1Q53GL0 409 aaPredicted RBP25.49■■□□□ 1.67
SQSTM1-216ENST00000626660 DDX54Q8TDD1 881 aaKnown RBP25.49■■□□□ 1.67
SQSTM1-216ENST00000626660 PCDH11XQ9BZA7 1347 aa25.48■■□□□ 1.67
SQSTM1-216ENST00000626660 PCDH11YQ9BZA8 1340 aa25.48■■□□□ 1.67
SQSTM1-216ENST00000626660 AMOTQ4VCS5 1084 aa25.48■■□□□ 1.67
SQSTM1-216ENST00000626660 FAM196AQ6ZSG2 479 aa25.48■■□□□ 1.67
SQSTM1-216ENST00000626660 MARCH10Q8NA82 808 aaPredicted RBP25.48■■□□□ 1.67
SQSTM1-216ENST00000626660 SHANK3Q9BYB0 1731 aa25.48■■□□□ 1.67
SQSTM1-216ENST00000626660 FAM182BQ5T319 152 aa25.47■■□□□ 1.67
SQSTM1-216ENST00000626660 KAT6BQ8WYB5 2073 aa25.46■■□□□ 1.67
SQSTM1-216ENST00000626660 WDR43Q15061 677 aaKnown RBP eCLIP25.46■■□□□ 1.67
SQSTM1-216ENST00000626660 FCHSD2O94868 740 aa25.45■■□□□ 1.66
SQSTM1-216ENST00000626660 CCDC125Q86Z20 511 aa25.45■■□□□ 1.66
SQSTM1-216ENST00000626660 RSPH6AQ9H0K4 717 aa25.44■■□□□ 1.66
SQSTM1-216ENST00000626660 PRKAR2BP31323 418 aa25.43■■□□□ 1.66
SQSTM1-216ENST00000626660 PNNQ9H307 717 aaKnown RBP25.43■■□□□ 1.66
SQSTM1-216ENST00000626660 MRS2Q9HD23 443 aa25.43■■□□□ 1.66
SQSTM1-216ENST00000626660 NEFMP07197 916 aa25.42■■□□□ 1.66
SQSTM1-216ENST00000626660 ZNF530Q6P9A1 599 aaPredicted RBP25.42■■□□□ 1.66
SQSTM1-216ENST00000626660 CYP27B1O15528 508 aa25.41■■□□□ 1.66
SQSTM1-216ENST00000626660 BCL9O00512 1426 aa25.4■■□□□ 1.66
SQSTM1-216ENST00000626660 IFNL2Q8IZJ0 200 aa25.4■■□□□ 1.66
SQSTM1-216ENST00000626660 C1orf141Q5JVX7 400 aa25.39■■□□□ 1.66
SQSTM1-216ENST00000626660 SBF2Q86WG5 1849 aa25.38■■□□□ 1.65
SQSTM1-216ENST00000626660 PHKG2P15735 406 aa25.38■■□□□ 1.65
SQSTM1-216ENST00000626660 CCDC184Q52MB2 194 aa25.38■■□□□ 1.65
SQSTM1-216ENST00000626660 HSP90AB1P08238 724 aaKnown RBP25.36■■□□□ 1.65
SQSTM1-216ENST00000626660 GAS2L2Q8NHY3 880 aa25.36■■□□□ 1.65
SQSTM1-216ENST00000626660 MTHFSDQ2M296 383 aaKnown RBP25.35■■□□□ 1.65
SQSTM1-216ENST00000626660 MAPK8IP3Q9UPT6 1336 aa25.35■■□□□ 1.65
SQSTM1-216ENST00000626660 TRIM37O94972 964 aa25.34■■□□□ 1.65
SQSTM1-216ENST00000626660 SF3B2Q13435 895 aaKnown RBP25.34■■□□□ 1.65
SQSTM1-216ENST00000626660 NKX1-1Q15270 411 aaPredicted RBP25.34■■□□□ 1.65
SQSTM1-216ENST00000626660 PHACTR3Q96KR7 559 aa25.34■■□□□ 1.65
SQSTM1-216ENST00000626660 DOT1LQ8TEK3 1739 aa25.34■■□□□ 1.65
SQSTM1-216ENST00000626660 AKAP4Q5JQC9 854 aa25.33■■□□□ 1.65
SQSTM1-216ENST00000626660 ACSBG1Q96GR2 724 aa25.33■■□□□ 1.65
SQSTM1-216ENST00000626660 ADAMTS8Q9UP79 889 aa25.33■■□□□ 1.65
SQSTM1-216ENST00000626660 NHSQ6T4R5 1651 aa25.32■■□□□ 1.64
SQSTM1-216ENST00000626660 EP400Q96L91 3159 aa25.32■■□□□ 1.64
SQSTM1-216ENST00000626660 SRCAPQ6ZRS2 3230 aa25.31■■□□□ 1.64
SQSTM1-216ENST00000626660 DCAF5Q96JK2 942 aa25.31■■□□□ 1.64
SQSTM1-216ENST00000626660 PLEKHF1Q96S99 279 aa25.31■■□□□ 1.64
SQSTM1-216ENST00000626660 CCER2I3L3R5 266 aa25.3■■□□□ 1.64
SQSTM1-216ENST00000626660 PNISRQ8TF01 805 aaKnown RBP25.3■■□□□ 1.64
SQSTM1-216ENST00000626660 BCL11BQ9C0K0 894 aaPredicted RBP25.3■■□□□ 1.64
SQSTM1-216ENST00000626660 SYTL4Q96C24 671 aaPredicted RBP25.29■■□□□ 1.64
SQSTM1-216ENST00000626660 MAP3K5Q99683 1374 aa25.29■■□□□ 1.64
SQSTM1-216ENST00000626660 TNS1Q9HBL0 1735 aaKnown RBP25.29■■□□□ 1.64
SQSTM1-216ENST00000626660 PRIM1P49642 420 aaKnown RBP25.28■■□□□ 1.64
SQSTM1-216ENST00000626660 RUNDC1Q96C34 613 aa25.28■■□□□ 1.64
SQSTM1-216ENST00000626660 TOGARAM1Q9Y4F4 1720 aa25.28■■□□□ 1.64
SQSTM1-216ENST00000626660 GNAT3A8MTJ3 354 aa25.27■■□□□ 1.64
SQSTM1-216ENST00000626660 KCNQ2O43526 872 aa25.27■■□□□ 1.64
SQSTM1-216ENST00000626660 MPRIPQ6WCQ1 1025 aa25.27■■□□□ 1.64
SQSTM1-216ENST00000626660 CCDC146Q8IYE0 955 aa25.27■■□□□ 1.64
SQSTM1-216ENST00000626660 MIER1Q8N108 512 aa25.27■■□□□ 1.64
SQSTM1-216ENST00000626660 SCN11AQ9UI33 1791 aa25.26■■□□□ 1.63
SQSTM1-216ENST00000626660 ITGB4P16144 1822 aa25.26■■□□□ 1.63
SQSTM1-216ENST00000626660 VIRMAQ69YN4 1812 aaKnown RBP25.26■■□□□ 1.63
SQSTM1-216ENST00000626660 APBA3O96018 575 aa25.25■■□□□ 1.63
SQSTM1-216ENST00000626660 NFE2L2Q16236 605 aa25.25■■□□□ 1.63
SQSTM1-216ENST00000626660 KDM6AO15550 1401 aaPredicted RBP25.25■■□□□ 1.63
SQSTM1-216ENST00000626660 BTAF1O14981 1849 aa25.25■■□□□ 1.63
SQSTM1-216ENST00000626660 ERVV-2B6SEH9 535 aa25.24■■□□□ 1.63
SQSTM1-216ENST00000626660 BAG6P46379 1132 aa25.24■■□□□ 1.63
SQSTM1-216ENST00000626660 RTF1Q92541 710 aaKnown RBP25.24■■□□□ 1.63
SQSTM1-216ENST00000626660 DLG5Q8TDM6 1919 aa25.24■■□□□ 1.63
SQSTM1-216ENST00000626660 TMOD3Q9NYL9 352 aa25.23■■□□□ 1.63
SQSTM1-216ENST00000626660 RNMTO43148 476 aaKnown RBP25.22■■□□□ 1.63
SQSTM1-216ENST00000626660 PTF1AQ7RTS3 328 aa25.22■■□□□ 1.63
SQSTM1-216ENST00000626660 FAM9BQ8IZU0 186 aa25.22■■□□□ 1.63
SQSTM1-216ENST00000626660 CABP4P57796 275 aa25.21■■□□□ 1.63
SQSTM1-216ENST00000626660 ADAMTS7Q9UKP4 1686 aa25.2■■□□□ 1.63
SQSTM1-216ENST00000626660 HTATSF1O43719 755 aaKnown RBP25.2■■□□□ 1.62
SQSTM1-216ENST00000626660 LGR6Q9HBX8 967 aa25.19■■□□□ 1.62
SQSTM1-216ENST00000626660 TMPOP42166 694 aaKnown RBP25.18■■□□□ 1.62
SQSTM1-216ENST00000626660 RIPK4P57078 832 aa25.17■■□□□ 1.62
SQSTM1-216ENST00000626660 LMOD3Q0VAK6 560 aa25.17■■□□□ 1.62
SQSTM1-216ENST00000626660 TEFQ10587 303 aa25.17■■□□□ 1.62
SQSTM1-216ENST00000626660 DEFB132Q7Z7B7 95 aa25.17■■□□□ 1.62
SQSTM1-216ENST00000626660 PIGBQ92521 554 aa25.17■■□□□ 1.62
SQSTM1-216ENST00000626660 RGPD3A6NKT7 1758 aaPredicted RBP25.16■■□□□ 1.62
SQSTM1-216ENST00000626660 RGPD4Q7Z3J3 1758 aa25.16■■□□□ 1.62
SQSTM1-216ENST00000626660 IL17REQ8NFR9 667 aa25.16■■□□□ 1.62
SQSTM1-216ENST00000626660 SLC52A2Q9HAB3 445 aa25.16■■□□□ 1.62
SQSTM1-216ENST00000626660 MRC1P22897 1456 aa25.15■■□□□ 1.62
SQSTM1-216ENST00000626660 PLSCR1O15162 318 aa25.15■■□□□ 1.62
SQSTM1-216ENST00000626660 EN1Q05925 392 aaPredicted RBP25.15■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms