RNA–Protein interactions for RNA: ENST00000622702.1

PDLIM2-221, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5 BASIC

Gene PDLIM2, Length 1,490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-221ENST00000622702 WDR43Q15061 677 aaKnown RBP eCLIP26.46■■□□□ 1.83
PDLIM2-221ENST00000622702 USHBP1Q8N6Y0 703 aa26.45■■□□□ 1.82
PDLIM2-221ENST00000622702 U2AF1L5P0DN76 240 aaPredicted RBP26.44■■□□□ 1.82
PDLIM2-221ENST00000622702 U2AF1Q01081 240 aaKnown RBP eCLIP26.44■■□□□ 1.82
PDLIM2-221ENST00000622702 KDRP35968 1356 aa26.43■■□□□ 1.82
PDLIM2-221ENST00000622702 EXOC5O00471 708 aa26.42■■□□□ 1.82
PDLIM2-221ENST00000622702 SULT6B1Q6IMI4 303 aa26.41■■□□□ 1.82
PDLIM2-221ENST00000622702 ADAMTS8Q9UP79 889 aa26.41■■□□□ 1.82
PDLIM2-221ENST00000622702 FCHSD2O94868 740 aa26.39■■□□□ 1.82
PDLIM2-221ENST00000622702 AEBP1Q8IUX7 1158 aa26.39■■□□□ 1.82
PDLIM2-221ENST00000622702 TNS2Q63HR2 1409 aa26.39■■□□□ 1.81
PDLIM2-221ENST00000622702 HMOX1P09601 288 aa26.38■■□□□ 1.81
PDLIM2-221ENST00000622702 FAM196AQ6ZSG2 479 aa26.38■■□□□ 1.81
PDLIM2-221ENST00000622702 FAM9BQ8IZU0 186 aa26.38■■□□□ 1.81
PDLIM2-221ENST00000622702 MARCH10Q8NA82 808 aaPredicted RBP26.37■■□□□ 1.81
PDLIM2-221ENST00000622702 RAPGEF4Q8WZA2 1011 aa26.37■■□□□ 1.81
PDLIM2-221ENST00000622702 RSPH6AQ9H0K4 717 aa26.37■■□□□ 1.81
PDLIM2-221ENST00000622702 MEGF6O75095 1541 aa26.37■■□□□ 1.81
PDLIM2-221ENST00000622702 OVOS2A0A0G2JMS6 1433 aa26.35■■□□□ 1.81
PDLIM2-221ENST00000622702 CCDC125Q86Z20 511 aa26.35■■□□□ 1.81
PDLIM2-221ENST00000622702 PNNQ9H307 717 aaKnown RBP26.35■■□□□ 1.81
PDLIM2-221ENST00000622702 PLEKHG2Q9H7P9 1386 aa26.34■■□□□ 1.81
PDLIM2-221ENST00000622702 TATP17735 454 aaPredicted RBP26.34■■□□□ 1.81
PDLIM2-221ENST00000622702 PRKAR2BP31323 418 aa26.32■■□□□ 1.8
PDLIM2-221ENST00000622702 ZCRB1Q8TBF4 217 aaKnown RBP26.32■■□□□ 1.8
PDLIM2-221ENST00000622702 PLEKHF1Q96S99 279 aa26.32■■□□□ 1.8
PDLIM2-221ENST00000622702 DDX54Q8TDD1 881 aaKnown RBP26.3■■□□□ 1.8
PDLIM2-221ENST00000622702 TRIM37O94972 964 aa26.3■■□□□ 1.8
PDLIM2-221ENST00000622702 SF3B2Q13435 895 aaKnown RBP26.3■■□□□ 1.8
PDLIM2-221ENST00000622702 RUNDC1Q96C34 613 aa26.29■■□□□ 1.8
PDLIM2-221ENST00000622702 SHANK3Q9BYB0 1731 aa26.28■■□□□ 1.8
PDLIM2-221ENST00000622702 SBF2Q86WG5 1849 aa26.27■■□□□ 1.8
PDLIM2-221ENST00000622702 CCDC146Q8IYE0 955 aa26.26■■□□□ 1.79
PDLIM2-221ENST00000622702 TNS1Q9HBL0 1735 aaKnown RBP26.25■■□□□ 1.79
PDLIM2-221ENST00000622702 NEFMP07197 916 aa26.25■■□□□ 1.79
PDLIM2-221ENST00000622702 PHACTR3Q96KR7 559 aa26.25■■□□□ 1.79
PDLIM2-221ENST00000622702 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP26.25■■□□□ 1.79
PDLIM2-221ENST00000622702 BCL9O00512 1426 aa26.25■■□□□ 1.79
PDLIM2-221ENST00000622702 MAPK8IP3Q9UPT6 1336 aa26.24■■□□□ 1.79
PDLIM2-221ENST00000622702 AMOTQ4VCS5 1084 aa26.23■■□□□ 1.79
PDLIM2-221ENST00000622702 PKD1L3Q7Z443 1732 aa26.23■■□□□ 1.79
PDLIM2-221ENST00000622702 DEFB132Q7Z7B7 95 aa26.23■■□□□ 1.79
PDLIM2-221ENST00000622702 PLEKHO1Q53GL0 409 aaPredicted RBP26.22■■□□□ 1.79
PDLIM2-221ENST00000622702 SPG7Q9UQ90 795 aa26.22■■□□□ 1.79
PDLIM2-221ENST00000622702 PCDH11XQ9BZA7 1347 aa26.21■■□□□ 1.79
PDLIM2-221ENST00000622702 PCDH11YQ9BZA8 1340 aa26.21■■□□□ 1.79
PDLIM2-221ENST00000622702 BAG6P46379 1132 aa26.2■■□□□ 1.78
PDLIM2-221ENST00000622702 ACSBG1Q96GR2 724 aa26.2■■□□□ 1.78
PDLIM2-221ENST00000622702 APBA3O96018 575 aa26.19■■□□□ 1.78
PDLIM2-221ENST00000622702 MTHFSDQ2M296 383 aaKnown RBP26.19■■□□□ 1.78
PDLIM2-221ENST00000622702 PTF1AQ7RTS3 328 aa26.19■■□□□ 1.78
PDLIM2-221ENST00000622702 GAS2L2Q8NHY3 880 aa26.19■■□□□ 1.78
PDLIM2-221ENST00000622702 APAF1O14727 1248 aa26.18■■□□□ 1.78
PDLIM2-221ENST00000622702 CYP27B1O15528 508 aa26.18■■□□□ 1.78
PDLIM2-221ENST00000622702 BCL11BQ9C0K0 894 aaPredicted RBP26.18■■□□□ 1.78
PDLIM2-221ENST00000622702 KAT6BQ8WYB5 2073 aa26.17■■□□□ 1.78
PDLIM2-221ENST00000622702 KCNQ2O43526 872 aa26.17■■□□□ 1.78
PDLIM2-221ENST00000622702 NHSQ6T4R5 1651 aa26.17■■□□□ 1.78
PDLIM2-221ENST00000622702 EN1Q05925 392 aaPredicted RBP26.17■■□□□ 1.78
PDLIM2-221ENST00000622702 NFE2L2Q16236 605 aa26.17■■□□□ 1.78
PDLIM2-221ENST00000622702 TMPOP42166 694 aaKnown RBP26.16■■□□□ 1.78
PDLIM2-221ENST00000622702 DOT1LQ8TEK3 1739 aa26.14■■□□□ 1.78
PDLIM2-221ENST00000622702 NCBP3Q53F19 620 aaKnown RBP26.14■■□□□ 1.78
PDLIM2-221ENST00000622702 ZNF530Q6P9A1 599 aaPredicted RBP26.14■■□□□ 1.78
PDLIM2-221ENST00000622702 IFNL2Q8IZJ0 200 aa26.12■■□□□ 1.77
PDLIM2-221ENST00000622702 NGEFQ8N5V2 710 aa26.12■■□□□ 1.77
PDLIM2-221ENST00000622702 PHKG2P15735 406 aa26.11■■□□□ 1.77
PDLIM2-221ENST00000622702 AKAP4Q5JQC9 854 aa26.11■■□□□ 1.77
PDLIM2-221ENST00000622702 SYTL4Q96C24 671 aaPredicted RBP26.11■■□□□ 1.77
PDLIM2-221ENST00000622702 PRIM1P49642 420 aaKnown RBP26.11■■□□□ 1.77
PDLIM2-221ENST00000622702 RIPK4P57078 832 aa26.11■■□□□ 1.77
PDLIM2-221ENST00000622702 EZH2Q15910 746 aaKnown RBP26.11■■□□□ 1.77
PDLIM2-221ENST00000622702 C1orf141Q5JVX7 400 aa26.11■■□□□ 1.77
PDLIM2-221ENST00000622702 RRP7AQ9Y3A4 280 aaKnown RBP26.11■■□□□ 1.77
PDLIM2-221ENST00000622702 MAP3K5Q99683 1374 aa26.1■■□□□ 1.77
PDLIM2-221ENST00000622702 CAMKK2Q96RR4 588 aa26.1■■□□□ 1.77
PDLIM2-221ENST00000622702 GNAT3A8MTJ3 354 aa26.09■■□□□ 1.77
PDLIM2-221ENST00000622702 NKX1-1Q15270 411 aaPredicted RBP26.09■■□□□ 1.77
PDLIM2-221ENST00000622702 BTAF1O14981 1849 aa26.08■■□□□ 1.77
PDLIM2-221ENST00000622702 HTATSF1O43719 755 aaKnown RBP26.08■■□□□ 1.77
PDLIM2-221ENST00000622702 NEUROD2Q15784 382 aa26.08■■□□□ 1.77
PDLIM2-221ENST00000622702 CCDC27Q2M243 656 aa26.08■■□□□ 1.77
PDLIM2-221ENST00000622702 DLG5Q8TDM6 1919 aa26.08■■□□□ 1.77
PDLIM2-221ENST00000622702 PLSCR1O15162 318 aa26.07■■□□□ 1.76
PDLIM2-221ENST00000622702 HNRNPUQ00839 825 aaKnown RBP eCLIP26.07■■□□□ 1.76
PDLIM2-221ENST00000622702 LMOD3Q0VAK6 560 aa26.07■■□□□ 1.76
PDLIM2-221ENST00000622702 HSP90AB1P08238 724 aaKnown RBP26.06■■□□□ 1.76
PDLIM2-221ENST00000622702 TOGARAM1Q9Y4F4 1720 aa26.06■■□□□ 1.76
PDLIM2-221ENST00000622702 TRIM35Q9UPQ4 493 aa26.05■■□□□ 1.76
PDLIM2-221ENST00000622702 SENP3-EIF4A1A0A087X0R7 540 aa26.04■■□□□ 1.76
PDLIM2-221ENST00000622702 RGPD3A6NKT7 1758 aaPredicted RBP26.04■■□□□ 1.76
PDLIM2-221ENST00000622702 RGPD4Q7Z3J3 1758 aa26.04■■□□□ 1.76
PDLIM2-221ENST00000622702 RTF1Q92541 710 aaKnown RBP26.04■■□□□ 1.76
PDLIM2-221ENST00000622702 ADAMTS7Q9UKP4 1686 aa26.03■■□□□ 1.76
PDLIM2-221ENST00000622702 ITGB4P16144 1822 aa26.03■■□□□ 1.76
PDLIM2-221ENST00000622702 DCAF5Q96JK2 942 aa26.03■■□□□ 1.76
PDLIM2-221ENST00000622702 MPRIPQ6WCQ1 1025 aa26.02■■□□□ 1.76
PDLIM2-221ENST00000622702 RREB1Q92766 1687 aa26.02■■□□□ 1.76
PDLIM2-221ENST00000622702 KDM6AO15550 1401 aaPredicted RBP26.01■■□□□ 1.75
PDLIM2-221ENST00000622702 WWC1Q8IX03 1113 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms