RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 USP54Q70EL1 1684 aa11.08□□□□□ -0.64
CLK1-215ENST00000621181 SENP3-EIF4A1A0A087X0R7 540 aa11.08□□□□□ -0.64
CLK1-215ENST00000621181 SYTL4Q96C24 671 aaPredicted RBP11.08□□□□□ -0.64
CLK1-215ENST00000621181 TERF2IPQ9NYB0 399 aa11.08□□□□□ -0.64
CLK1-215ENST00000621181 POLD1P28340 1107 aa11.07□□□□□ -0.64
CLK1-215ENST00000621181 SLC27A3Q5K4L6 730 aa11.07□□□□□ -0.64
CLK1-215ENST00000621181 SLC16A10Q8TF71 515 aa11.07□□□□□ -0.64
CLK1-215ENST00000621181 LTV1Q96GA3 475 aaPredicted RBP11.07□□□□□ -0.64
CLK1-215ENST00000621181 TFCP2L1Q9NZI6 479 aa11.07□□□□□ -0.64
CLK1-215ENST00000621181 PELP1Q8IZL8 1130 aaKnown RBP11.07□□□□□ -0.64
CLK1-215ENST00000621181 A0A1W2PP64 1363 aa11.06□□□□□ -0.64
CLK1-215ENST00000621181 C1QTNF8P60827 252 aa11.06□□□□□ -0.64
CLK1-215ENST00000621181 IP6K1Q92551 441 aa11.06□□□□□ -0.64
CLK1-215ENST00000621181 AKT1S1Q96B36 256 aa11.06□□□□□ -0.64
CLK1-215ENST00000621181 KCNQ4P56696 695 aa11.05□□□□□ -0.64
CLK1-215ENST00000621181 SPINK5Q9NQ38 1064 aaPredicted RBP11.05□□□□□ -0.64
CLK1-215ENST00000621181 CEP350Q5VT06 3117 aa11.05□□□□□ -0.64
CLK1-215ENST00000621181 ZEB1P37275 1124 aaPredicted RBP11.05□□□□□ -0.64
CLK1-215ENST00000621181 PRIM1P49642 420 aaKnown RBP11.05□□□□□ -0.64
CLK1-215ENST00000621181 PNPLA7Q6ZV29 1317 aa11.05□□□□□ -0.64
CLK1-215ENST00000621181 FAM208AQ9UK61 1670 aaKnown RBP11.04□□□□□ -0.64
CLK1-215ENST00000621181 COG3Q96JB2 828 aa11.04□□□□□ -0.64
CLK1-215ENST00000621181 ANKRD36BQ8N2N9 1353 aa11.03□□□□□ -0.64
CLK1-215ENST00000621181 AMPHP49418 695 aa11.03□□□□□ -0.64
CLK1-215ENST00000621181 QSER1Q2KHR3 1735 aa11.02□□□□□ -0.64
CLK1-215ENST00000621181 GIGYF1O75420 1035 aaPredicted RBP11.02□□□□□ -0.64
CLK1-215ENST00000621181 DOT1LQ8TEK3 1739 aa11.02□□□□□ -0.65
CLK1-215ENST00000621181 MAP3K19Q56UN5 1328 aa11.02□□□□□ -0.65
CLK1-215ENST00000621181 HOXC9P31274 260 aa11.02□□□□□ -0.65
CLK1-215ENST00000621181 ZCRB1Q8TBF4 217 aaKnown RBP11.02□□□□□ -0.65
CLK1-215ENST00000621181 PUS7Q96PZ0 661 aaKnown RBP11.02□□□□□ -0.65
CLK1-215ENST00000621181 CCNL1Q9UK58 526 aaPredicted RBP11.02□□□□□ -0.65
CLK1-215ENST00000621181 NLGN2Q8NFZ4 835 aa11.01□□□□□ -0.65
CLK1-215ENST00000621181 TONSLQ96HA7 1378 aa11.01□□□□□ -0.65
CLK1-215ENST00000621181 USP47Q96K76 1375 aa11.01□□□□□ -0.65
CLK1-215ENST00000621181 TUBGCP6Q96RT7 1819 aa11.01□□□□□ -0.65
CLK1-215ENST00000621181 FBLN1P23142 703 aa11□□□□□ -0.65
CLK1-215ENST00000621181 LY75O60449 1722 aa10.99□□□□□ -0.65
CLK1-215ENST00000621181 NSD2O96028 1365 aa10.99□□□□□ -0.65
CLK1-215ENST00000621181 MEGF6O75095 1541 aa10.99□□□□□ -0.65
CLK1-215ENST00000621181 COL24A1Q17RW2 1714 aa10.99□□□□□ -0.65
CLK1-215ENST00000621181 RGPD2P0DJD1 1756 aa10.99□□□□□ -0.65
CLK1-215ENST00000621181 GRIN3BO60391 1043 aa10.98□□□□□ -0.65
CLK1-215ENST00000621181 RAPGEF4Q8WZA2 1011 aa10.98□□□□□ -0.65
CLK1-215ENST00000621181 SMG6Q86US8 1419 aaKnown RBP10.98□□□□□ -0.65
CLK1-215ENST00000621181 ST20-MTHFSA0A0A6YYL1 179 aa10.98□□□□□ -0.65
CLK1-215ENST00000621181 RRS1Q15050 365 aaKnown RBP10.98□□□□□ -0.65
CLK1-215ENST00000621181 MSL1Q68DK7 614 aa10.98□□□□□ -0.65
CLK1-215ENST00000621181 COL23A1Q86Y22 540 aaPredicted RBP10.98□□□□□ -0.65
CLK1-215ENST00000621181 RTL1A6NKG5 1358 aa10.97□□□□□ -0.65
CLK1-215ENST00000621181 SHANK3Q9BYB0 1731 aa10.97□□□□□ -0.65
CLK1-215ENST00000621181 CGNL1Q0VF96 1302 aa10.97□□□□□ -0.65
CLK1-215ENST00000621181 SLC24A1O60721 1099 aa10.97□□□□□ -0.65
CLK1-215ENST00000621181 YBX3P16989 372 aaKnown RBP eCLIP10.97□□□□□ -0.65
CLK1-215ENST00000621181 NBPF6Q5VWK0 638 aa10.97□□□□□ -0.65
CLK1-215ENST00000621181 USHBP1Q8N6Y0 703 aa10.97□□□□□ -0.65
CLK1-215ENST00000621181 NBPF4Q96M43 638 aa10.97□□□□□ -0.65
CLK1-215ENST00000621181 TESK2Q96S53 571 aa10.97□□□□□ -0.65
CLK1-215ENST00000621181 CAPN15O75808 1086 aa10.96□□□□□ -0.65
CLK1-215ENST00000621181 TATP17735 454 aaPredicted RBP10.95□□□□□ -0.66
CLK1-215ENST00000621181 HMGB2P26583 209 aaKnown RBP10.95□□□□□ -0.66
CLK1-215ENST00000621181 SAMD1Q6SPF0 538 aaPredicted RBP10.95□□□□□ -0.66
CLK1-215ENST00000621181 GGNBP2Q9H3C7 697 aa10.95□□□□□ -0.66
CLK1-215ENST00000621181 PCDH11XQ9BZA7 1347 aa10.95□□□□□ -0.66
CLK1-215ENST00000621181 PCDH11YQ9BZA8 1340 aa10.95□□□□□ -0.66
CLK1-215ENST00000621181 PALLDQ8WX93 1383 aa10.94□□□□□ -0.66
CLK1-215ENST00000621181 MPRIPQ6WCQ1 1025 aa10.94□□□□□ -0.66
CLK1-215ENST00000621181 FLAD1Q8NFF5 587 aa10.94□□□□□ -0.66
CLK1-215ENST00000621181 C5P01031 1676 aa10.94□□□□□ -0.66
CLK1-215ENST00000621181 FYB1O15117 783 aa10.93□□□□□ -0.66
CLK1-215ENST00000621181 HSP90AB2PQ58FF8 381 aa10.93□□□□□ -0.66
CLK1-215ENST00000621181 AK7Q96M32 723 aa10.93□□□□□ -0.66
CLK1-215ENST00000621181 CD2APQ9Y5K6 639 aa10.93□□□□□ -0.66
CLK1-215ENST00000621181 TMF1P82094 1093 aa10.92□□□□□ -0.66
CLK1-215ENST00000621181 GPBP1L1Q9HC44 474 aaPredicted RBP10.92□□□□□ -0.66
CLK1-215ENST00000621181 INSRP06213 1382 aa10.92□□□□□ -0.66
CLK1-215ENST00000621181 FLT4P35916 1363 aa10.92□□□□□ -0.66
CLK1-215ENST00000621181 ATP10DQ9P241 1426 aa10.91□□□□□ -0.66
CLK1-215ENST00000621181 TAF1LQ8IZX4 1826 aa10.91□□□□□ -0.66
CLK1-215ENST00000621181 CYP27B1O15528 508 aa10.91□□□□□ -0.66
CLK1-215ENST00000621181 PHF14O94880 888 aa10.91□□□□□ -0.66
CLK1-215ENST00000621181 SMARCC1Q92922 1105 aaPredicted RBP10.91□□□□□ -0.66
CLK1-215ENST00000621181 ZNF526Q8TF50 670 aaPredicted RBP10.9□□□□□ -0.66
CLK1-215ENST00000621181 WWC3Q9ULE0 1092 aa10.9□□□□□ -0.66
CLK1-215ENST00000621181 C4BP0C0L5 1744 aa10.9□□□□□ -0.67
CLK1-215ENST00000621181 NSD3Q9BZ95 1437 aa10.9□□□□□ -0.67
CLK1-215ENST00000621181 PPM1GO15355 546 aaPredicted RBP10.89□□□□□ -0.67
CLK1-215ENST00000621181 KIF24Q5T7B8 1368 aa10.89□□□□□ -0.67
CLK1-215ENST00000621181 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.88□□□□□ -0.67
CLK1-215ENST00000621181 CDCA8Q53HL2 280 aa10.88□□□□□ -0.67
CLK1-215ENST00000621181 IFFO2Q5TF58 517 aa10.88□□□□□ -0.67
CLK1-215ENST00000621181 ITGB4P16144 1822 aa10.88□□□□□ -0.67
CLK1-215ENST00000621181 KIF20BQ96Q89 1820 aa10.88□□□□□ -0.67
CLK1-215ENST00000621181 AMIGO3Q86WK7 504 aa10.88□□□□□ -0.67
CLK1-215ENST00000621181 PIGBQ92521 554 aa10.88□□□□□ -0.67
CLK1-215ENST00000621181 IGSF1Q8N6C5 1336 aa10.88□□□□□ -0.67
CLK1-215ENST00000621181 LOC102724428A0A0B4J2F2 783 aa10.87□□□□□ -0.67
CLK1-215ENST00000621181 SIK1P57059 783 aa10.87□□□□□ -0.67
CLK1-215ENST00000621181 SMIM5Q71RC9 77 aa10.87□□□□□ -0.67
CLK1-215ENST00000621181 SPG7Q9UQ90 795 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms