RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 CCDC30Q5VVM6 783 aa19.75■□□□□ 0.75
CPSF1-213ENST00000620219 TECPR2O15040 1411 aa19.75■□□□□ 0.75
CPSF1-213ENST00000620219 LNPKQ9C0E8 428 aa19.74■□□□□ 0.75
CPSF1-213ENST00000620219 KDM4FA0A1W2PPD8 638 aa19.74■□□□□ 0.75
CPSF1-213ENST00000620219 SPG7Q9UQ90 795 aa19.74■□□□□ 0.75
CPSF1-213ENST00000620219 AATKQ6ZMQ8 1374 aa19.74■□□□□ 0.75
CPSF1-213ENST00000620219 IL16Q14005 1332 aa19.74■□□□□ 0.75
CPSF1-213ENST00000620219 ANXA1P04083 346 aa19.73■□□□□ 0.75
CPSF1-213ENST00000620219 UBR1Q8IWV7 1749 aa19.73■□□□□ 0.75
CPSF1-213ENST00000620219 PTCH1Q13635 1447 aa19.72■□□□□ 0.75
CPSF1-213ENST00000620219 PCDHB15Q9Y5E8 787 aa19.72■□□□□ 0.75
CPSF1-213ENST00000620219 ADGRL3Q9HAR2 1447 aa19.72■□□□□ 0.75
CPSF1-213ENST00000620219 VAMP4O75379 141 aa19.71■□□□□ 0.75
CPSF1-213ENST00000620219 CABP4P57796 275 aa19.71■□□□□ 0.75
CPSF1-213ENST00000620219 SLC4A3P48751 1232 aa19.7■□□□□ 0.74
CPSF1-213ENST00000620219 MYL6BP14649 208 aa19.7■□□□□ 0.74
CPSF1-213ENST00000620219 AMOTQ4VCS5 1084 aa19.7■□□□□ 0.74
CPSF1-213ENST00000620219 LGR6Q9HBX8 967 aa19.7■□□□□ 0.74
CPSF1-213ENST00000620219 NOP58Q9Y2X3 529 aaKnown RBP19.7■□□□□ 0.74
CPSF1-213ENST00000620219 PTCD1O75127 700 aaKnown RBP19.69■□□□□ 0.74
CPSF1-213ENST00000620219 SLC39A6Q13433 755 aa19.69■□□□□ 0.74
CPSF1-213ENST00000620219 ARHGAP23Q9P227 1491 aa19.69■□□□□ 0.74
CPSF1-213ENST00000620219 CHMP4AQ9BY43 222 aa19.68■□□□□ 0.74
CPSF1-213ENST00000620219 ALDH1L2Q3SY69 923 aa19.68■□□□□ 0.74
CPSF1-213ENST00000620219 CHMP3Q9Y3E7 222 aa19.68■□□□□ 0.74
CPSF1-213ENST00000620219 LMTK3Q96Q04 1460 aa19.68■□□□□ 0.74
CPSF1-213ENST00000620219 PDZRN3Q9UPQ7 1066 aa19.68■□□□□ 0.74
CPSF1-213ENST00000620219 C9orf78Q9NZ63 289 aaPredicted RBP19.68■□□□□ 0.74
CPSF1-213ENST00000620219 SLIT1O75093 1534 aa19.67■□□□□ 0.74
CPSF1-213ENST00000620219 UBAP1LF5GYI3 381 aa19.66■□□□□ 0.74
CPSF1-213ENST00000620219 HMMRO75330 724 aa19.66■□□□□ 0.74
CPSF1-213ENST00000620219 ARHGEF25Q86VW2 580 aa19.66■□□□□ 0.74
CPSF1-213ENST00000620219 ANKARQ7Z5J8 1434 aa19.66■□□□□ 0.74
CPSF1-213ENST00000620219 MSH5O43196 834 aa19.66■□□□□ 0.74
CPSF1-213ENST00000620219 RTL5Q5HYW3 569 aaPredicted RBP19.66■□□□□ 0.74
CPSF1-213ENST00000620219 RBM42Q9BTD8 480 aaKnown RBP19.66■□□□□ 0.74
CPSF1-213ENST00000620219 BRINP3Q76B58 766 aa19.65■□□□□ 0.74
CPSF1-213ENST00000620219 DIP2AQ14689 1571 aa19.65■□□□□ 0.74
CPSF1-213ENST00000620219 HSP90AA1P07900 732 aaKnown RBP19.65■□□□□ 0.74
CPSF1-213ENST00000620219 FAM161AQ3B820 660 aa19.65■□□□□ 0.74
CPSF1-213ENST00000620219 RIC3Q7Z5B4 369 aa19.65■□□□□ 0.74
CPSF1-213ENST00000620219 ANP32EQ9BTT0 268 aa19.65■□□□□ 0.74
CPSF1-213ENST00000620219 BACH2Q9BYV9 841 aa19.65■□□□□ 0.74
CPSF1-213ENST00000620219 AXIN2Q9Y2T1 843 aa19.65■□□□□ 0.74
CPSF1-213ENST00000620219 MEX3CQ5U5Q3 659 aaKnown RBP19.64■□□□□ 0.73
CPSF1-213ENST00000620219 CDC42BPGQ6DT37 1551 aa19.64■□□□□ 0.73
CPSF1-213ENST00000620219 MFAP1P55081 439 aaKnown RBP19.64■□□□□ 0.73
CPSF1-213ENST00000620219 PNPLA6Q8IY17 1366 aa19.63■□□□□ 0.73
CPSF1-213ENST00000620219 PHF23Q9BUL5 403 aaPredicted RBP19.63■□□□□ 0.73
CPSF1-213ENST00000620219 MRPL50Q8N5N7 158 aaKnown RBP19.63■□□□□ 0.73
CPSF1-213ENST00000620219 IL17REQ8NFR9 667 aa19.63■□□□□ 0.73
CPSF1-213ENST00000620219 IPO9Q96P70 1041 aaKnown RBP19.63■□□□□ 0.73
CPSF1-213ENST00000620219 PIP4K2AP48426 406 aaPredicted RBP19.62■□□□□ 0.73
CPSF1-213ENST00000620219 CDK12Q9NYV4 1490 aaPredicted RBP19.62■□□□□ 0.73
CPSF1-213ENST00000620219 IFNL2Q8IZJ0 200 aa19.62■□□□□ 0.73
CPSF1-213ENST00000620219 MAP3K5Q99683 1374 aa19.61■□□□□ 0.73
CPSF1-213ENST00000620219 NFATC2IPQ8NCF5 419 aa19.61■□□□□ 0.73
CPSF1-213ENST00000620219 IGSF1Q8N6C5 1336 aa19.61■□□□□ 0.73
CPSF1-213ENST00000620219 AKAP4Q5JQC9 854 aa19.61■□□□□ 0.73
CPSF1-213ENST00000620219 BTG4Q9NY30 223 aa19.61■□□□□ 0.73
CPSF1-213ENST00000620219 CHL1O00533 1208 aa19.61■□□□□ 0.73
CPSF1-213ENST00000620219 UBTFL1P0CB47 393 aaPredicted RBP19.6■□□□□ 0.73
CPSF1-213ENST00000620219 NEXNQ0ZGT2 675 aa19.6■□□□□ 0.73
CPSF1-213ENST00000620219 KIAA0232Q92628 1395 aa19.6■□□□□ 0.73
CPSF1-213ENST00000620219 FLIIQ13045 1269 aa19.6■□□□□ 0.73
CPSF1-213ENST00000620219 G2E3Q7L622 706 aa19.59■□□□□ 0.73
CPSF1-213ENST00000620219 ARHGEF10O15013 1369 aa19.59■□□□□ 0.73
CPSF1-213ENST00000620219 MAP2P11137 1827 aaKnown RBP19.59■□□□□ 0.73
CPSF1-213ENST00000620219 DDX58O95786 925 aaKnown RBP19.59■□□□□ 0.73
CPSF1-213ENST00000620219 MED14O60244 1454 aa19.59■□□□□ 0.73
CPSF1-213ENST00000620219 LRRC7Q96NW7 1537 aa19.59■□□□□ 0.73
CPSF1-213ENST00000620219 NRXN3Q9Y4C0 1643 aa19.58■□□□□ 0.73
CPSF1-213ENST00000620219 SPRYD3Q8NCJ5 442 aa19.58■□□□□ 0.72
CPSF1-213ENST00000620219 C1orf167Q5SNV9 1468 aa19.58■□□□□ 0.72
CPSF1-213ENST00000620219 KCNQ3O43525 872 aa19.58■□□□□ 0.72
CPSF1-213ENST00000620219 TOM1O60784 492 aa19.58■□□□□ 0.72
CPSF1-213ENST00000620219 OVOS2A0A0J9YW53 1432 aa19.57■□□□□ 0.72
CPSF1-213ENST00000620219 OVOS2Q6IE36 1432 aa19.57■□□□□ 0.72
CPSF1-213ENST00000620219 CHPF2Q9P2E5 772 aa19.57■□□□□ 0.72
CPSF1-213ENST00000620219 NPHP1O15259 732 aa19.57■□□□□ 0.72
CPSF1-213ENST00000620219 ZCRB1Q8TBF4 217 aaKnown RBP19.56■□□□□ 0.72
CPSF1-213ENST00000620219 NGLY1Q96IV0 654 aa19.56■□□□□ 0.72
CPSF1-213ENST00000620219 TRIM6-TRIM34B2RNG4 842 aa19.56■□□□□ 0.72
CPSF1-213ENST00000620219 AAMPQ13685 434 aa19.56■□□□□ 0.72
CPSF1-213ENST00000620219 RNMTO43148 476 aaKnown RBP19.56■□□□□ 0.72
CPSF1-213ENST00000620219 SRCIN1Q9C0H9 1055 aa19.56■□□□□ 0.72
CPSF1-213ENST00000620219 KDM2BQ8NHM5 1336 aa19.56■□□□□ 0.72
CPSF1-213ENST00000620219 HSP90AB1P08238 724 aaKnown RBP19.55■□□□□ 0.72
CPSF1-213ENST00000620219 CCT4P50991 539 aaKnown RBP19.54■□□□□ 0.72
CPSF1-213ENST00000620219 HTATSF1O43719 755 aaKnown RBP19.54■□□□□ 0.72
CPSF1-213ENST00000620219 MEIS3Q99687 375 aa19.54■□□□□ 0.72
CPSF1-213ENST00000620219 PHAXQ9H814 394 aaKnown RBP19.54■□□□□ 0.72
CPSF1-213ENST00000620219 PI4KAP2A4QPH2 592 aa19.54■□□□□ 0.72
CPSF1-213ENST00000620219 GNAI2P04899 355 aa19.54■□□□□ 0.72
CPSF1-213ENST00000620219 CASC1Q6TDU7 716 aa19.54■□□□□ 0.72
CPSF1-213ENST00000620219 PI4KAP1Q8N8J0 262 aa19.54■□□□□ 0.72
CPSF1-213ENST00000620219 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.54■□□□□ 0.72
CPSF1-213ENST00000620219 DDRGK1Q96HY6 314 aa19.53■□□□□ 0.72
CPSF1-213ENST00000620219 IQSEC2Q5JU85 1478 aa19.53■□□□□ 0.72
CPSF1-213ENST00000620219 USP31Q70CQ4 1352 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms