RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 METTL24Q5JXM2 366 aa12.24□□□□□ -0.45
SMARCA1-205ENST00000617310 A0A087WZG4 1122 aa12.24□□□□□ -0.45
SMARCA1-205ENST00000617310 ZSCAN29Q8IWY8 852 aaPredicted RBP12.24□□□□□ -0.45
SMARCA1-205ENST00000617310 BICD2Q8TD16 824 aa12.24□□□□□ -0.45
SMARCA1-205ENST00000617310 GNL3LQ9NVN8 582 aaKnown RBP12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 FMNL2Q96PY5 1086 aa12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 RAI14Q9P0K7 980 aa12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 LRPPRCP42704 1394 aaKnown RBP12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 GCP02774 474 aa12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 RARSP54136 660 aaKnown RBP12.23□□□□□ -0.45
SMARCA1-205ENST00000617310 IGHMBP2P38935 993 aaKnown RBP12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 ERC1Q8IUD2 1116 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 PI4KAP2A4QPH2 592 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 STK3Q13188 491 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 CSPP1Q1MSJ5 1256 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 PPIP5K1Q6PFW1 1433 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 LARP1Q6PKG0 1096 aaKnown RBP12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 PI4KAP1Q8N8J0 262 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 LRP2BPQ9P2M1 347 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 CWC27Q6UX04 472 aaKnown RBP12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 UBE3BQ7Z3V4 1068 aa12.22□□□□□ -0.45
SMARCA1-205ENST00000617310 FLIIQ13045 1269 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 GCC1Q96CN9 775 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 IFT57Q9NWB7 429 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 POLKQ9UBT6 870 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 ATP6V1DQ9Y5K8 247 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 LMTK3Q96Q04 1460 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 CCDC8Q9H0W5 538 aaPredicted RBP12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 LRRFIP2Q9Y608 721 aaKnown RBP12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 NINLQ9Y2I6 1382 aa12.21□□□□□ -0.45
SMARCA1-205ENST00000617310 DUOX2Q9NRD8 1548 aa12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 EIF4A2Q14240 407 aaKnown RBP12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 TPD52L1Q16890 204 aaPredicted RBP12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 KRT24Q2M2I5 525 aa12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 ZCRB1Q8TBF4 217 aaKnown RBP12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 DNAAF4Q8WXU2 420 aa12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 BOLA2Q9H3K6 86 aa12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 DBF4Q9UBU7 674 aaPredicted RBP12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 SHROOM2Q13796 1616 aa12.21□□□□□ -0.46
SMARCA1-205ENST00000617310 MBIPQ9NS73 344 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 GOLGA6L3A6NEY3 463 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 DDB1Q16531 1140 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 TESK2Q96S53 571 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 ZNF652Q9Y2D9 606 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 CHD1LQ86WJ1 897 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 PIBF1Q8WXW3 757 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 AK7Q96M32 723 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 ARID3AQ99856 593 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 CARD14Q9BXL6 1004 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 ANKIB1Q9P2G1 1089 aa12.2□□□□□ -0.46
SMARCA1-205ENST00000617310 BECN2A8MW95 431 aa12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 CT47B1P0C2W7 299 aaPredicted RBP12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 TBX22Q9Y458 520 aa12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 LTKP29376 864 aa12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 SAFBQ15424 915 aaKnown RBP eCLIP12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 BTG4Q9NY30 223 aa12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 TPM4P67936 248 aa12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 CFAP65Q6ZU64 1925 aaKnown RBP12.19□□□□□ -0.46
SMARCA1-205ENST00000617310 TRIM27P14373 513 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 KIAA2012Q0VF49 1180 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 SNRKQ9NRH2 765 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 CEBPZQ03701 1054 aaKnown RBP12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 SART3Q15020 963 aaKnown RBP12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 MAP3K2Q9Y2U5 619 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 IFIT5Q13325 482 aaKnown RBP12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 AAMPQ13685 434 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 NFATC2IPQ8NCF5 419 aa12.18□□□□□ -0.46
SMARCA1-205ENST00000617310 C6orf229H3BNL8 230 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 NUP133Q8WUM0 1156 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 CCDC43Q96MW1 224 aaKnown RBP12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 CEP170Q5SW79 1584 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 TDO2P48775 406 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 TSHZ3Q63HK5 1081 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 MAP3K19Q56UN5 1328 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 CCAR1Q8IX12 1150 aaKnown RBP12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 RPAP2Q8IXW5 612 aaPredicted RBP12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 PHACTR3Q96KR7 559 aa12.17□□□□□ -0.46
SMARCA1-205ENST00000617310 EYA1Q99502 592 aa12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 PRAG1Q86YV5 1406 aa12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 YEATS2Q9ULM3 1422 aa12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 MTHFSDQ2M296 383 aaKnown RBP12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 COPS6Q7L5N1 327 aa12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 CHPF2Q9P2E5 772 aa12.16□□□□□ -0.46
SMARCA1-205ENST00000617310 RFC4P35249 363 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 XAGE3Q8WTP9 111 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 UPF3BQ9BZI7 483 aaKnown RBP12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 CHMP5Q9NZZ3 219 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 IQSEC3Q9UPP2 1182 aaPredicted RBP12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 ANKRD36BQ8N2N9 1353 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 TTC21AQ8NDW8 1320 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 GOLGA6L19H0YKK7 550 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 PTMSP20962 102 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 PSMA5P28066 241 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 ATP6V1AP38606 617 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 LDHAL6AQ6ZMR3 332 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 ZNF622Q969S3 477 aaKnown RBP eCLIP12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 NACAP1Q9BZK3 213 aa12.15□□□□□ -0.46
SMARCA1-205ENST00000617310 DDX11L8A8MPP1 907 aa12.14□□□□□ -0.47
SMARCA1-205ENST00000617310 SNRPA1P09661 255 aaKnown RBP12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms