RNA–Protein interactions for RNA: ENST00000616074.4

TRAPPC3-208, Transcript of trafficking protein particle complex 3, humanhuman

TSL 5 BASIC

Gene TRAPPC3, Length 1,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-208ENST00000616074 USHBP1Q8N6Y0 703 aa28.99■■■□□ 2.23
TRAPPC3-208ENST00000616074 SYTL4Q96C24 671 aaPredicted RBP28.99■■■□□ 2.23
TRAPPC3-208ENST00000616074 SGIP1Q9BQI5 828 aa28.99■■■□□ 2.23
TRAPPC3-208ENST00000616074 SMG6Q86US8 1419 aaKnown RBP28.99■■■□□ 2.23
TRAPPC3-208ENST00000616074 LY75O60449 1722 aa28.99■■■□□ 2.23
TRAPPC3-208ENST00000616074 QSER1Q2KHR3 1735 aa28.99■■■□□ 2.23
TRAPPC3-208ENST00000616074 PRIM1P49642 420 aaKnown RBP28.98■■■□□ 2.23
TRAPPC3-208ENST00000616074 NSD2O96028 1365 aa28.98■■■□□ 2.23
TRAPPC3-208ENST00000616074 SLC27A3Q5K4L6 730 aa28.96■■■□□ 2.23
TRAPPC3-208ENST00000616074 TUBGCP6Q96RT7 1819 aa28.96■■■□□ 2.23
TRAPPC3-208ENST00000616074 NSD3Q9BZ95 1437 aa28.95■■■□□ 2.23
TRAPPC3-208ENST00000616074 HSP90AB2PQ58FF8 381 aa28.95■■■□□ 2.22
TRAPPC3-208ENST00000616074 AKT1S1Q96B36 256 aa28.95■■■□□ 2.22
TRAPPC3-208ENST00000616074 CARD14Q9BXL6 1004 aa28.95■■■□□ 2.22
TRAPPC3-208ENST00000616074 FHDC1Q9C0D6 1143 aaPredicted RBP28.95■■■□□ 2.22
TRAPPC3-208ENST00000616074 INSRP06213 1382 aa28.95■■■□□ 2.22
TRAPPC3-208ENST00000616074 FLT4P35916 1363 aa28.95■■■□□ 2.22
TRAPPC3-208ENST00000616074 TIMELESSQ9UNS1 1208 aa28.94■■■□□ 2.22
TRAPPC3-208ENST00000616074 UTRNP46939 3433 aa28.94■■■□□ 2.22
TRAPPC3-208ENST00000616074 CGNL1Q0VF96 1302 aa28.93■■■□□ 2.22
TRAPPC3-208ENST00000616074 KIF24Q5T7B8 1368 aa28.92■■■□□ 2.22
TRAPPC3-208ENST00000616074 KCNQ4P56696 695 aa28.92■■■□□ 2.22
TRAPPC3-208ENST00000616074 RAPGEF4Q8WZA2 1011 aa28.92■■■□□ 2.22
TRAPPC3-208ENST00000616074 SYT17Q9BSW7 474 aa28.92■■■□□ 2.22
TRAPPC3-208ENST00000616074 ANKRD26Q9UPS8 1709 aa28.89■■■□□ 2.22
TRAPPC3-208ENST00000616074 TATP17735 454 aaPredicted RBP28.89■■■□□ 2.22
TRAPPC3-208ENST00000616074 ARXQ96QS3 562 aa28.89■■■□□ 2.22
TRAPPC3-208ENST00000616074 EMILIN1Q9Y6C2 1016 aa28.88■■■□□ 2.21
TRAPPC3-208ENST00000616074 COL24A1Q17RW2 1714 aa28.88■■■□□ 2.21
TRAPPC3-208ENST00000616074 PNPLA7Q6ZV29 1317 aa28.88■■■□□ 2.21
TRAPPC3-208ENST00000616074 PCGF6Q9BYE7 350 aa28.87■■■□□ 2.21
TRAPPC3-208ENST00000616074 CLSPNQ9HAW4 1339 aa28.87■■■□□ 2.21
TRAPPC3-208ENST00000616074 PCDH11XQ9BZA7 1347 aa28.85■■■□□ 2.21
TRAPPC3-208ENST00000616074 PCDH11YQ9BZA8 1340 aa28.85■■■□□ 2.21
TRAPPC3-208ENST00000616074 PKD1L3Q7Z443 1732 aa28.84■■■□□ 2.21
TRAPPC3-208ENST00000616074 TFCP2L1Q9NZI6 479 aa28.84■■■□□ 2.21
TRAPPC3-208ENST00000616074 CCNL1Q9UK58 526 aaPredicted RBP28.84■■■□□ 2.21
TRAPPC3-208ENST00000616074 MAP2P11137 1827 aaKnown RBP28.84■■■□□ 2.21
TRAPPC3-208ENST00000616074 SLC16A10Q8TF71 515 aa28.83■■■□□ 2.21
TRAPPC3-208ENST00000616074 MAP3K5Q99683 1374 aa28.83■■■□□ 2.21
TRAPPC3-208ENST00000616074 TOGARAM1Q9Y4F4 1720 aa28.83■■■□□ 2.21
TRAPPC3-208ENST00000616074 NCAPD2Q15021 1401 aa28.81■■■□□ 2.2
TRAPPC3-208ENST00000616074 C5P01031 1676 aa28.8■■■□□ 2.2
TRAPPC3-208ENST00000616074 PPM1GO15355 546 aaPredicted RBP28.8■■■□□ 2.2
TRAPPC3-208ENST00000616074 ITGB4P16144 1822 aa28.8■■■□□ 2.2
TRAPPC3-208ENST00000616074 CYP27B1O15528 508 aa28.79■■■□□ 2.2
TRAPPC3-208ENST00000616074 POLR3GLQ9BT43 218 aa28.77■■■□□ 2.2
TRAPPC3-208ENST00000616074 TAF1LQ8IZX4 1826 aa28.77■■■□□ 2.2
TRAPPC3-208ENST00000616074 POLD1P28340 1107 aa28.76■■■□□ 2.19
TRAPPC3-208ENST00000616074 WASHC2AQ641Q2 1341 aa28.75■■■□□ 2.19
TRAPPC3-208ENST00000616074 CHD4Q14839 1912 aa28.75■■■□□ 2.19
TRAPPC3-208ENST00000616074 MPRIPQ6WCQ1 1025 aa28.74■■■□□ 2.19
TRAPPC3-208ENST00000616074 PALLDQ8WX93 1383 aa28.74■■■□□ 2.19
TRAPPC3-208ENST00000616074 KLHL34Q8N239 644 aa28.73■■■□□ 2.19
TRAPPC3-208ENST00000616074 POLKQ9UBT6 870 aa28.72■■■□□ 2.19
TRAPPC3-208ENST00000616074 GOLGB1Q14789 3259 aaKnown RBP28.71■■■□□ 2.19
TRAPPC3-208ENST00000616074 COL23A1Q86Y22 540 aaPredicted RBP28.71■■■□□ 2.19
TRAPPC3-208ENST00000616074 EYA1Q99502 592 aa28.71■■■□□ 2.19
TRAPPC3-208ENST00000616074 MSH5O43196 834 aa28.69■■■□□ 2.18
TRAPPC3-208ENST00000616074 EIF4G2P78344 907 aaKnown RBP eCLIP28.68■■■□□ 2.18
TRAPPC3-208ENST00000616074 SPG7Q9UQ90 795 aa28.68■■■□□ 2.18
TRAPPC3-208ENST00000616074 C4BP0C0L5 1744 aa28.68■■■□□ 2.18
TRAPPC3-208ENST00000616074 HSPA5P11021 654 aaKnown RBP28.67■■■□□ 2.18
TRAPPC3-208ENST00000616074 TNNT2P45379 298 aaPredicted RBP28.67■■■□□ 2.18
TRAPPC3-208ENST00000616074 NKX1-1Q15270 411 aaPredicted RBP28.67■■■□□ 2.18
TRAPPC3-208ENST00000616074 ZNF784Q8NCA9 323 aaPredicted RBP28.65■■■□□ 2.18
TRAPPC3-208ENST00000616074 PIGBQ92521 554 aa28.65■■■□□ 2.18
TRAPPC3-208ENST00000616074 EIF4A2Q14240 407 aaKnown RBP28.64■■■□□ 2.18
TRAPPC3-208ENST00000616074 GPR162Q16538 588 aa28.64■■■□□ 2.18
TRAPPC3-208ENST00000616074 NLGN2Q8NFZ4 835 aa28.64■■■□□ 2.18
TRAPPC3-208ENST00000616074 SMARCC1Q92922 1105 aaPredicted RBP28.64■■■□□ 2.18
TRAPPC3-208ENST00000616074 MSL1Q68DK7 614 aa28.63■■■□□ 2.17
TRAPPC3-208ENST00000616074 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP28.63■■■□□ 2.17
TRAPPC3-208ENST00000616074 UBR3Q6ZT12 1888 aa28.62■■■□□ 2.17
TRAPPC3-208ENST00000616074 PANK3Q9H999 370 aa28.62■■■□□ 2.17
TRAPPC3-208ENST00000616074 HMGB2P26583 209 aaKnown RBP28.61■■■□□ 2.17
TRAPPC3-208ENST00000616074 PHKG2P15735 406 aa28.59■■■□□ 2.17
TRAPPC3-208ENST00000616074 PELP1Q8IZL8 1130 aaKnown RBP28.59■■■□□ 2.17
TRAPPC3-208ENST00000616074 FLAD1Q8NFF5 587 aa28.59■■■□□ 2.17
TRAPPC3-208ENST00000616074 AMIGO3Q86WK7 504 aa28.58■■■□□ 2.17
TRAPPC3-208ENST00000616074 IFNL2Q8IZJ0 200 aa28.58■■■□□ 2.17
TRAPPC3-208ENST00000616074 CCER1Q8TC90 406 aaPredicted RBP28.58■■■□□ 2.17
TRAPPC3-208ENST00000616074 AK7Q96M32 723 aa28.58■■■□□ 2.17
TRAPPC3-208ENST00000616074 TMOD3Q9NYL9 352 aa28.57■■■□□ 2.16
TRAPPC3-208ENST00000616074 IGSF1Q8N6C5 1336 aa28.56■■■□□ 2.16
TRAPPC3-208ENST00000616074 PLEKHG2Q9H7P9 1386 aa28.55■■■□□ 2.16
TRAPPC3-208ENST00000616074 LOC102724428A0A0B4J2F2 783 aa28.55■■■□□ 2.16
TRAPPC3-208ENST00000616074 SIK1P57059 783 aa28.55■■■□□ 2.16
TRAPPC3-208ENST00000616074 ASAP1Q9ULH1 1129 aa28.54■■■□□ 2.16
TRAPPC3-208ENST00000616074 PHF14O94880 888 aa28.53■■■□□ 2.16
TRAPPC3-208ENST00000616074 SMIM5Q71RC9 77 aa28.53■■■□□ 2.16
TRAPPC3-208ENST00000616074 LINC00116Q8NCU8 138 aa28.53■■■□□ 2.16
TRAPPC3-208ENST00000616074 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.5■■■□□ 2.15
TRAPPC3-208ENST00000616074 YBX3P16989 372 aaKnown RBP eCLIP28.5■■■□□ 2.159e-6■■■□□ 18.1
TRAPPC3-208ENST00000616074 ITPK1Q13572 414 aa28.49■■■□□ 2.15
TRAPPC3-208ENST00000616074 ATG3Q9NT62 314 aa28.49■■■□□ 2.15
TRAPPC3-208ENST00000616074 ATP6V1AP38606 617 aa28.48■■■□□ 2.15
TRAPPC3-208ENST00000616074 MORC1Q86VD1 984 aa28.48■■■□□ 2.15
TRAPPC3-208ENST00000616074 SSFA2P28290 1259 aa28.47■■■□□ 2.15
TRAPPC3-208ENST00000616074 CD2APQ9Y5K6 639 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms