RNA–Protein interactions for RNA: ENST00000611725.4

SNX13-213, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 6,817 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-213ENST00000611725 AATKQ6ZMQ8 1374 aa7.76□□□□□ -1.17
SNX13-213ENST00000611725 PRR36Q9H6K5 1346 aa7.76□□□□□ -1.17
SNX13-213ENST00000611725 TTC22Q5TAA0 569 aa7.76□□□□□ -1.17
SNX13-213ENST00000611725 ZCCHC11Q5TAX3 1644 aaKnown RBP7.76□□□□□ -1.17
SNX13-213ENST00000611725 ZNF853P0CG23 659 aa7.76□□□□□ -1.17
SNX13-213ENST00000611725 FOXD4L6Q3SYB3 417 aaPredicted RBP7.75□□□□□ -1.17
SNX13-213ENST00000611725 FOXD4L3Q6VB84 417 aaPredicted RBP7.75□□□□□ -1.17
SNX13-213ENST00000611725 UPF3BQ9BZI7 483 aaKnown RBP7.75□□□□□ -1.17
SNX13-213ENST00000611725 ATP6V1DQ9Y5K8 247 aa7.75□□□□□ -1.17
SNX13-213ENST00000611725 RBM25P49756 843 aaKnown RBP7.75□□□□□ -1.17
SNX13-213ENST00000611725 BRPF1P55201 1214 aaPredicted RBP7.75□□□□□ -1.17
SNX13-213ENST00000611725 RBM42Q9BTD8 480 aaKnown RBP7.75□□□□□ -1.17
SNX13-213ENST00000611725 CHMP3Q9Y3E7 222 aa7.75□□□□□ -1.17
SNX13-213ENST00000611725 CEP85Q6P2H3 762 aa7.75□□□□□ -1.17
SNX13-213ENST00000611725 USP19O94966 1318 aa7.75□□□□□ -1.17
SNX13-213ENST00000611725 MSNP26038 577 aaKnown RBP7.75□□□□□ -1.17
SNX13-213ENST00000611725 TNPO1Q92973 898 aaKnown RBP7.75□□□□□ -1.17
SNX13-213ENST00000611725 ABCC4O15439 1325 aa7.75□□□□□ -1.17
SNX13-213ENST00000611725 SDSP20132 328 aa7.75□□□□□ -1.17
SNX13-213ENST00000611725 SNX21Q969T3 373 aa7.75□□□□□ -1.17
SNX13-213ENST00000611725 LRRFIP2Q9Y608 721 aaKnown RBP7.75□□□□□ -1.17
SNX13-213ENST00000611725 PDE1AP54750 535 aa7.74□□□□□ -1.17
SNX13-213ENST00000611725 MCTP1Q6DN14 999 aa7.74□□□□□ -1.17
SNX13-213ENST00000611725 PLEKHM2Q8IWE5 1019 aa7.74□□□□□ -1.17
SNX13-213ENST00000611725 DNAAF4Q8WXU2 420 aa7.74□□□□□ -1.17
SNX13-213ENST00000611725 CWC22Q9HCG8 908 aaKnown RBP7.74□□□□□ -1.17
SNX13-213ENST00000611725 PNPLA6Q8IY17 1366 aa7.74□□□□□ -1.17
SNX13-213ENST00000611725 CLTCL1P53675 1640 aa7.74□□□□□ -1.17
SNX13-213ENST00000611725 ATF3P18847 181 aa7.74□□□□□ -1.17
SNX13-213ENST00000611725 ZC3H6P61129 1189 aaKnown RBP7.74□□□□□ -1.17
SNX13-213ENST00000611725 RIC3Q7Z5B4 369 aa7.74□□□□□ -1.17
SNX13-213ENST00000611725 HTATSF1O43719 755 aaKnown RBP7.74□□□□□ -1.17
SNX13-213ENST00000611725 C16orf71Q8IYS4 520 aaPredicted RBP7.74□□□□□ -1.17
SNX13-213ENST00000611725 TET3O43151 1660 aa7.74□□□□□ -1.17
SNX13-213ENST00000611725 MPRIPQ6WCQ1 1025 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 OTUD7AQ8TE49 926 aaPredicted RBP7.73□□□□□ -1.17
SNX13-213ENST00000611725 DBF4Q9UBU7 674 aaPredicted RBP7.73□□□□□ -1.17
SNX13-213ENST00000611725 MADDQ8WXG6 1647 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 PI4KAP2A4QPH2 592 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 G2E3Q7L622 706 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 PI4KAP1Q8N8J0 262 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 NAP1L2Q9ULW6 460 aaPredicted RBP7.73□□□□□ -1.17
SNX13-213ENST00000611725 AMOTQ4VCS5 1084 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 CROCC2H7BZ55 1655 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 PRPF40AO75400 957 aaKnown RBP7.73□□□□□ -1.17
SNX13-213ENST00000611725 MBD3O95983 291 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 ANXA1P04083 346 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 NUTM1Q86Y26 1132 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 CNTROBQ8N137 903 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 KIF1BPQ96EK5 621 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 RNF17Q9BXT8 1623 aaKnown RBP7.73□□□□□ -1.17
SNX13-213ENST00000611725 ADGRB3O60242 1522 aa7.73□□□□□ -1.17
SNX13-213ENST00000611725 BTBD11A6QL63 1104 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 SSFA2P28290 1259 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 CAVIN1Q6NZI2 390 aaKnown RBP7.72□□□□□ -1.17
SNX13-213ENST00000611725 GORABQ5T7V8 394 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 TSHZ3Q63HK5 1081 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 FAM43AQ8N2R8 423 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 KIAA0232Q92628 1395 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 PPP1R42Q7Z4L9 355 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 SHROOM2Q13796 1616 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 RNF20Q5VTR2 975 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 SBNO1A3KN83 1393 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 ROBO2Q9HCK4 1378 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 NRXN1Q9ULB1 1477 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 CDC42BPBQ9Y5S2 1711 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 CHD1O14646 1710 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 TATP17735 454 aaPredicted RBP7.72□□□□□ -1.17
SNX13-213ENST00000611725 ERC1Q8IUD2 1116 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 GRPEL1Q9HAV7 217 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 SMC3Q9UQE7 1217 aa7.72□□□□□ -1.17
SNX13-213ENST00000611725 GLRX3O76003 335 aaKnown RBP7.71□□□□□ -1.17
SNX13-213ENST00000611725 ATP8B2P98198 1209 aa7.71□□□□□ -1.17
SNX13-213ENST00000611725 ZRSR1Q15695 479 aaKnown RBP7.71□□□□□ -1.17
SNX13-213ENST00000611725 FSD1Q9BTV5 496 aa7.71□□□□□ -1.17
SNX13-213ENST00000611725 HOXC9P31274 260 aa7.71□□□□□ -1.17
SNX13-213ENST00000611725 DNTTIP2Q5QJE6 756 aaKnown RBP7.71□□□□□ -1.17
SNX13-213ENST00000611725 PIK3R4Q99570 1358 aa7.71□□□□□ -1.18
SNX13-213ENST00000611725 NASPP49321 788 aaPredicted RBP7.71□□□□□ -1.18
SNX13-213ENST00000611725 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.71□□□□□ -1.18
SNX13-213ENST00000611725 RHPN1Q8TCX5 695 aa7.71□□□□□ -1.18
SNX13-213ENST00000611725 VPS37CA5D8V6 355 aaPredicted RBP7.71□□□□□ -1.18
SNX13-213ENST00000611725 MAP3K4Q9Y6R4 1608 aa7.71□□□□□ -1.18
SNX13-213ENST00000611725 PHF14O94880 888 aa7.7□□□□□ -1.18
SNX13-213ENST00000611725 LAMC1P11047 1609 aa7.7□□□□□ -1.18
SNX13-213ENST00000611725 RAB11FIP3O75154 756 aa7.7□□□□□ -1.18
SNX13-213ENST00000611725 ANTXR1Q9H6X2 564 aa7.7□□□□□ -1.18
SNX13-213ENST00000611725 ABCA9Q8IUA7 1624 aa7.7□□□□□ -1.18
SNX13-213ENST00000611725 A2ML1A8K2U0 1454 aa7.7□□□□□ -1.18
SNX13-213ENST00000611725 ATP7BP35670 1465 aa7.7□□□□□ -1.18
SNX13-213ENST00000611725 SIRT2Q8IXJ6 389 aa7.7□□□□□ -1.18
SNX13-213ENST00000611725 CCDC9Q9Y3X0 531 aaKnown RBP7.7□□□□□ -1.18
SNX13-213ENST00000611725 FAM135BQ49AJ0 1406 aa7.7□□□□□ -1.18
SNX13-213ENST00000611725 CSPP1Q1MSJ5 1256 aa7.69□□□□□ -1.18
SNX13-213ENST00000611725 ADGRB1O14514 1584 aa7.69□□□□□ -1.18
SNX13-213ENST00000611725 GCP02774 474 aa7.69□□□□□ -1.18
SNX13-213ENST00000611725 XRCC6P12956 609 aaKnown RBP eCLIP7.69□□□□□ -1.18
SNX13-213ENST00000611725 RNF214Q8ND24 703 aa7.69□□□□□ -1.18
SNX13-213ENST00000611725 PRDM11Q9NQV5 511 aa7.69□□□□□ -1.18
SNX13-213ENST00000611725 AACSQ86V21 672 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms